LOCUS       NZ_OX291798             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1050 plasmid 3, complete sequence.
ACCESSION   NZ_OX291798
VERSION     NZ_OX291798.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201017
            Assembly: GCF_946415285.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:45:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,246
            CDSs (total)                      :: 5,115
            Genes (coding)                    :: 5,043
            CDSs (with protein)               :: 5,043
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 28 of 73
            Pseudo Genes (incomplete)         :: 44 of 73
            Pseudo Genes (internal stop)      :: 15 of 73
            Pseudo Genes (multiple problems)  :: 11 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291798.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1050"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            complement(339..695)
                     /locus_tag="N4J75_RS26185"
                     /old_locus_tag="SAMEA13201017_05194"
     CDS             complement(339..695)
                     /locus_tag="N4J75_RS26185"
                     /old_locus_tag="SAMEA13201017_05194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            1371..1502
                     /locus_tag="N4J75_RS26190"
     CDS             1371..1502
                     /locus_tag="N4J75_RS26190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            1872..2060
                     /locus_tag="N4J75_RS26195"
     CDS             1872..2060
                     /locus_tag="N4J75_RS26195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            2149..2565
                     /locus_tag="N4J75_RS26200"
     CDS             2149..2565
                     /locus_tag="N4J75_RS26200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(2776..3294)
                     /locus_tag="N4J75_RS26205"
                     /old_locus_tag="SAMEA13201017_05196"
     CDS             complement(2776..3294)
                     /locus_tag="N4J75_RS26205"
                     /old_locus_tag="SAMEA13201017_05196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     Typing          1135..1479
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 taaacataca gcaaaaagtt gacaaaaaaa tctcagctaa tttcacaatt taccataaca
       61 tccgtttccc gcaccgcctc agacgcccta tgtgcgcttg aacaaccaaa gcagtaaaac
      121 cccctcactt ctccgcaaaa aaagcccgca aaatggcgta caggccgttt ggcggcatga
      181 atgattatgc aacccagcac gcagagacca ggttcagaga gaaacgcgac cgaatcgcgt
      241 gtttttgccg ttctgccaat gtgagaaacg gtgaacgggc gggcaattta ttgcgcggcc
      301 gtgaagcgtt ggccaagccg gcggcgcggc agtggggatc aacggcgcca gcgctgccac
      361 caccgtttga cgatcgccgg ctccgccggg gtaggatggt gctccagacg caagaccgcc
      421 gctttcaaat cggcgacctc ctgccgtaat gcgcgtattt cggcgagtaa taccgcctga
      481 tcttctgtgc caacgggctg tgacagcgtg tgccgcgcat ccgtgccatc aggctgcagt
      541 tcgccgtaca cgcgcagcaa ttccgtagtt tctaactccc gcctgccatc ggcattattg
      601 cgccatgata cgcggcctgc cgccatatca cggtagagcg tccgccgact ttttccggtc
      661 aatgcctgtg cctgcgacac actgtgccat gccatagaga cctccttttt tttggcacag
      721 tataggggag attcggggtg tcggggcttc gccctgacct gcgtgttgtc aaagccagga
      781 acaccggcgg taatgacaac acatttcctg tccgtcaccc tcgttttgga cgcgtcgccc
      841 acggcggtgc tacaaaacat atcctgtccc gcacgagagc caccggcagg gtaggcaacg
      901 tgtcaccgga tgaaggcatg caatgacgtc aaacgggaac actttgccta tcttgcatcg
      961 tcaacaaaag ccccgcgatg accgtgcgac atatcagtca aatgcacttc cgcttcctcg
     1021 cgttgacaga ctacgctagt caacactgcg gcgagcggtg gggataaaaa gggaaggatg
     1081 acggagtaag agcatgcaga aagacgggaa aaggccacag cccagcgggc tgtttttcca
     1141 taggctccgc ccccctgaca agcatcacaa tatctgacgc tcaaatcagt ggtggcgaaa
     1201 cccgacagga ctataaagat accaggcgtt tccccctgat ggctccctcg tgcgctctcc
     1261 tgttcctgcc tttcggttta ccgatgtcat tccgctgtta tggccgcgtt tatctcattc
     1321 cacgcctgac actcggttcc gggaaggcag ttcgctccaa gctggactgt atgcacgaac
     1381 cccccgttca gtccgaccac tgcaccttat ccggtaacta tcgacttgag tccaacccgg
     1441 aaagacacga caaagcgcca ctggcagcag ccgttggtag aggtgtacaa gagattaact
     1501 gaatgagagt tcttgaagtg gcaacccaac tgcggctaca ctgaaaggac agaatttggt
     1561 ttcagcggtc ttgtacaccc tgttaccacg gttcagaagt tccccaactt actgaaccct
     1621 cgaaaaaacc gcctccccag gcggtttttt cgtttcaaag gaagattacc gacagcacag
     1681 atagatctca agaaaatcat tcaatcaagc agaaacaaag caactttcct taccgcttga
     1741 atacacacga ttacacacag agattgacac cgtgtgtaat cgtgtgtatt attgtcgaaa
     1801 gtttccgctt ttgatggaga cgaaaggaac ccagctccgc aaaagcagag cacaaccata
     1861 aggtacgtag catgagttct tctgaagaca taatccgaag aattcagctc gatggatggg
     1921 aaaaagtggc ccaaaaaggt agtcatgtgc agtttaaaca tcctactaaa aagggtcgcg
     1981 taaccattcc tcacccgaac aaagacctgc ctaagggaac tgtaaaaagt atccttaagc
     2041 aggccgggat agctgaatga ttcctcaccg ggaaggcttt gccttcccgg tagagttcag
     2101 aatgacttac tacgtttaat gagtaatgag agagattagg agttaaccat gtacattccg
     2161 gtagtgatcc ataaggatgc cgatacggat tatggcgtaa ctgttcctga tattcctgga
     2221 tgttactcag caggtgtaac cgtagatgaa gcattgcaaa atgctaaaga ggcgattctt
     2281 tttcatatag aaggattaat tgaggatggc gtatatcatg aatttaaatt cagcgatata
     2341 gaagccttaa aaacttatga tgaatatcat gatggtatgt tttcgttggt tgacgtagat
     2401 cttagcgcat taacagatga agcgacaaga tttaatgtta gctggccaaa atacgtatta
     2461 accattttag atggttcatt aaaagaaact catgagactc gttcaggtta cttagcaaaa
     2521 ttagtgcttc aagacttgcg tagaaataga tcattccagg attaatgtga atcaaggata
     2581 gaactcatag gaggaacaga catggcaaaa gacagtaaag gtagaaaatt caataggatt
     2641 gcgtcatacc aaaagacttt atccagtggt gaagtaataa ctgttagagc tcatgtgaga
     2701 agcaacagaa aagactccgc tggtagtaag taagaaaaaa ggctagagaa atctagcctt
     2761 tttttattca ttcattcaac ttgctttctt ttcatcggac ggcggtgaat cattagcacc
     2821 agaaacatta cgtaaaagtt ccaaaacacc tgactcacca aactctttgt atagcctaat
     2881 catttccttc tgagcattgg agcgcttctg gctattcagg ttacgttcgc actctttcat
     2941 catcttttca ggttcagact tcagtcttgc aagatcgctc tcgtcaagat agaaagcaac
     3001 ctgttttact gcaccaccaa catcagcctt agtcgatatc gttctagcgg tgactggaag
     3061 atatttttgt ttaagagaat gagccacagc tgacgcacgg ttaacacaca gatcggccat
     3121 aatgttatag ccggaagtgg ttaccacgtt accatcacag agagctgcaa aagtacacaa
     3181 actggtttta tttaatttct tgattaactc cagcatcact tcgttgccag cgaagtgatt
     3241 atgaagatta tgactagcaa tttcaggagg atacaaatcg gttacttttt gcatttatag
     3301 cacctgttta cagagaataa ataacaggtg acggtgtccg tatgagcctt cgcgcatcaa
     3361 aaactgtgaa aaatacctgg caagtcggta ccaagttact acataatgca gcaccacttg
     3421 acaaacgccc taatcgggcg tttgttgatc aggtagattc agttttcacg aaccgagtca
     3481 ccggcagcta tcagaatcct tagtttctca ggccgaagat ctgatagctg cctcgttttt
     3541 cactgacaac ctcacgatca tcagaatttc ttattctacc ctattccata agcacacaca
     3601 tagctttttt actgatctct cgcgattgat ttacaaggga attaccagtc tggcagatga
     3661 aattagcaac agtactgtca gcgtagaact catgtt
//
