LOCUS       NZ_OX291774             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1044 plasmid 4, complete sequence.
ACCESSION   NZ_OX291774
VERSION     NZ_OX291774.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201013
            Assembly: GCF_946414065.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:43:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,244
            CDSs (total)                      :: 5,113
            Genes (coding)                    :: 5,041
            CDSs (with protein)               :: 5,041
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 28 of 73
            Pseudo Genes (incomplete)         :: 44 of 73
            Pseudo Genes (internal stop)      :: 15 of 73
            Pseudo Genes (multiple problems)  :: 11 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291774.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1044"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="4"
     gene            complement(<303..1007)
                     /locus_tag="N4J73_RS26205"
                     /pseudo=""
     CDS             complement(<303..1007)
                     /locus_tag="N4J73_RS26205"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(946..1269)
                     /locus_tag="N4J73_RS26210"
                     /old_locus_tag="SAMEA13201013_05198"
     CDS             complement(946..1269)
                     /locus_tag="N4J73_RS26210"
                     /old_locus_tag="SAMEA13201013_05198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(2287..2619)
                     /locus_tag="N4J73_RS26215"
     CDS             complement(2287..2619)
                     /locus_tag="N4J73_RS26215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(2787..3002)
                     /locus_tag="N4J73_RS26220"
                     /old_locus_tag="SAMEA13201013_05201"
     CDS             complement(2787..3002)
                     /locus_tag="N4J73_RS26220"
                     /old_locus_tag="SAMEA13201013_05201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     ARG             complement(2288..2619)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(1366..1557)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          1537..2020
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(4..959)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.925"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(2690..3213)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="86.441"
                     /coverage="99.0"
                     /evalue="4.47e-86"
ORIGIN
        1 ctatcagcag cgcggagacc agaacgatgg tcagccacgt ctggctgacc atgcgcagca
       61 tccctttcgt gcgctggctc atggctgagg acagcttccg gtcgtggtcg aggatggcgg
      121 cgctgattct cttctcgctt tcgctcagtt ccgctctgac agacttctcg tgctcgctga
      181 atgcggcttt cagcatctcg ccggtagtct gctgctgcgc tttcgatttc tgctctaagt
      241 ccttcgccag cgttaaaaga ctgttcatag atggctccct tcagtcggat gtttcgcccc
      301 ccgtccgggt cggcaatgct gatgctgctt tttgtggtgc gcaccacctc aaaacctgcg
      361 ctttccagcg cctcagtgac gtcctgacgc gttttcagct ccccggatga ggcaagggca
      421 agcaggccgc tcgtaatcgc ctgggcggct tcctgcttcg cttccggcag cgcggaaggc
      481 gagaccagca cccgccggtt ctccggcgcg ttcgggtcat gcagccccag cctgccgttc
      541 actatggtct gccaggcatc gatgcgcgga cggtcggcgc ggtcgtaata cggctgtagc
      601 cgcttgccgg tcagaagctc cgtgttcggg atcaggaagt tcagctccag ccgccccttg
      661 tcccggtgct caacccacag cacgctgtac tggtctttat cgagtccggg catcagaacc
      721 cgctcgaaac tcgccatcag cttttcgcgc tggccgggcg gtaaatcctg ttcggcaaaa
      781 gacagaacgc cggaagtgta ctttttggcg tagggcgagg cgtcgataag ctcccggact
      841 tcatccggct tcccctgcag aacgctggcg ccgtcgcgct ggcgatcttt acccagcaga
      901 taatcgaccg gcccgccgcc gccgccgcgc ccccgaggat gaaacttaac gatcatcatc
      961 agcacccttt tccagtacgg catgccgcaa ccgctcgagt ccggcatcga tggccatcag
     1021 cgcggcgaca atctgcacgc ggtcgtgtcc gcttccacca ccggcgttaa cctggcgggc
     1081 aatctggtta aggttgttcc ccatgccggc aagctgacga agcagcgccg gcgagatcga
     1141 cggaagtttg ccggcgcgtg cgggcttctc gtccaggcac gtctgccgca tccaggccgc
     1201 gagttgctta ccctcgcagc gctccagcag acgccggtgc tcgtcctcag tcacccacat
     1261 ggtgagcatt ttgctgcgtt tgtctgccaa tccggcctcc tgataacgcc gggacggacg
     1321 ggaaatcttt tcccggtcgg cacggtgttg gacaagccgc agacgcggca gtggttttag
     1381 cgggtttcgg ggcgcagccc tgaaccagtc acgtagcgct agcggagtgt atactggcta
     1441 aacatgttat gacggagtgg taatttatga aagtgcttca tgtgacaggg gaaaaatgcg
     1501 gctgccgggc gtaagtgcaa aatgcaggtg gtgatgaaat gacgcctcct cgctcactcg
     1561 gtcgctacgc tcctgccgtg agactgcggc gggcgttacc agctcacaga ttacgggata
     1621 agcaaatgcc gctcgaagca ggaaaggcca agaaaaggat gcggagttgc cgtttttcca
     1681 taggctccgc ccccctgacg agtatcacga aaatgacgct caaatcagcg gtggcgaaac
     1741 ccgatgcggc ttaaagatac caggcgtttc cccctggtgg ctccctcgtg ctcccccgca
     1801 ttcctgcctt tcggtttacc ggtgtcattc cgctgttatg gccgcggttt ctcattccac
     1861 gcctgaaact cggttccggg taggcagttc gctccaggat ggactgtatg cacgaacccc
     1921 ccgttcagtc cgactaccac gcccgttccg gtaactatca acttgagtcc aacccggaaa
     1981 gacacgacaa atcgccagtg gcggtagcca ttggtaactg ggttcacgga gcagagattg
     2041 tagagaatgc ctacagagtt cttgaagtga aagcctgagt gcggctacac tgaaaggaca
     2101 gtttaggtat ctgcgctccg tgaaagccag ttaccatcgg aacaaagagt tggtagctct
     2161 gaattccggc aaacgaacca ccgttggtag cggtggtttt tttgtttaca gggaaaaaga
     2221 ttacgcgcag aaagaaagga tctcaaggaa atccttttgc tttggccaat atgcttcggt
     2281 aaaaagttaa tgcgcagaag attttgaaaa aatattaata accaaaactc caacgcaaat
     2341 aaggaacatt cctgcaattg cgggccaatc aagtttttga ccgctaacca accaaccagc
     2401 taggcttatt agtacaattc ccgcaccaga ccaaattgcg taagcaatac cggtaggtat
     2461 attttccaat gtttgggaaa gcagataaaa ggcagcgcaa taacttattg cagttcctac
     2521 agacggccac aggcgtgtaa atccttctga atatttcata aaggtggtgc ctatgacttc
     2581 agccacaata gcccctccca ggaaaatata tgtattcata aaaatacctc atgttgaaaa
     2641 atttaaatat ctttacataa caactaatta atagaacccg gcttatcata gcgaaggacc
     2701 atgatgctgc cactgcgatc gttccagctc cagcgctttc tggtgctgca ccgcccgctc
     2761 ctgctgccgg tgagtttcta tcgcgttcag cctttcgaca accggcgcag ctgctcgctc
     2821 aaactctgca cctgcctgct caagaccgtg acgcgctcgt tcagcgccgc gttctcccgt
     2881 tgaataagac cagacatcgt ccgccattcc gcgaaggcgt tctcccactc gtccagcctt
     2941 ttcgagtagt cctgctgtag ctgctctaat gcgctcagca actgtttttc cagctccgtc
     3001 atgtgctatt tccccgccag tatcatccag ctcgagtcct ctccgaactg tcccgcttcc
     3061 gggttcaccc tcacgcagcg gcgtctctgc tcgccgcagg tcgagagctg tacgccgctg
     3121 ttcctctctg acagcatggc ctgcgtgctc ttctgctccc ggatggtcgt atagttctcg
     3181 agtatctgct gcccctgcca ccacagaatg cccgcgctcg acg
//
