LOCUS       NZ_OX291773             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1044 plasmid 3, complete sequence.
ACCESSION   NZ_OX291773
VERSION     NZ_OX291773.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201013
            Assembly: GCF_946414065.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:43:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,244
            CDSs (total)                      :: 5,113
            Genes (coding)                    :: 5,041
            CDSs (with protein)               :: 5,041
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 28 of 73
            Pseudo Genes (incomplete)         :: 44 of 73
            Pseudo Genes (internal stop)      :: 15 of 73
            Pseudo Genes (multiple problems)  :: 11 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291773.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1044"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            complement(20..376)
                     /locus_tag="N4J73_RS26180"
                     /old_locus_tag="SAMEA13201013_05194"
     CDS             complement(20..376)
                     /locus_tag="N4J73_RS26180"
                     /old_locus_tag="SAMEA13201013_05194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            1052..1183
                     /locus_tag="N4J73_RS26185"
     CDS             1052..1183
                     /locus_tag="N4J73_RS26185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            1553..1741
                     /locus_tag="N4J73_RS26190"
     CDS             1553..1741
                     /locus_tag="N4J73_RS26190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            1830..2246
                     /locus_tag="N4J73_RS26195"
     CDS             1830..2246
                     /locus_tag="N4J73_RS26195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(2457..2975)
                     /locus_tag="N4J73_RS26200"
                     /old_locus_tag="SAMEA13201013_05196"
     CDS             complement(2457..2975)
                     /locus_tag="N4J73_RS26200"
                     /old_locus_tag="SAMEA13201013_05196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     Typing          816..1160
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 ggcggcgcgg cagtggggat caacggcgcc agcgctgcca ccaccgtttg acgatcgccg
       61 gctccgccgg ggtaggatgg tgctccagac gcaagaccgc cgctttcaaa tcggcgacct
      121 cctgccgtaa tgcgcgtatt tcggcgagta ataccgcctg atcttctgtg ccaacgggct
      181 gtgacagcgt gtgccgcgca tccgtgccat caggctgcag ttcgccgtac acgcgcagca
      241 attccgtagt ttctaactcc cgcctgccat cggcattatt gcgccatgat acgcggcctg
      301 ccgccatatc acggtagagc gtccgccgac tttttccggt caatgcctgt gcctgcgaca
      361 cactgtgcca tgccatagag acctcctttt ttttggcaca gtatagggga gattcggggt
      421 gtcggggctt cgccctgacc tgcgtgttgt caaagccagg aacaccggcg gtaatgacaa
      481 cacatttcct gtccgtcacc ctcgttttgg acgcgtcgcc cacggcggtg ctacaaaaca
      541 tatcctgtcc cgcacgagag ccaccggcag ggtaggcaac gtgtcaccgg atgaaggcat
      601 gcaatgacgt caaacgggaa cactttgcct atcttgcatc gtcaacaaaa gccccgcgat
      661 gaccgtgcga catatcagtc aaatgcactt ccgcttcctc gcgttgacag actacgctag
      721 tcaacactgc ggcgagcggt ggggataaaa agggaaggat gacggagtaa gagcatgcag
      781 aaagacggga aaaggccaca gcccagcggg ctgtttttcc ataggctccg cccccctgac
      841 aagcatcaca atatctgacg ctcaaatcag tggtggcgaa acccgacagg actataaaga
      901 taccaggcgt ttccccctga tggctccctc gtgcgctctc ctgttcctgc ctttcggttt
      961 accgatgtca ttccgctgtt atggccgcgt ttatctcatt ccacgcctga cactcggttc
     1021 cgggaaggca gttcgctcca agctggactg tatgcacgaa ccccccgttc agtccgacca
     1081 ctgcacctta tccggtaact atcgacttga gtccaacccg gaaagacacg acaaagcgcc
     1141 actggcagca gccgttggta gaggtgtaca agagattaac tgaatgagag ttcttgaagt
     1201 ggcaacccaa ctgcggctac actgaaagga cagaatttgg tttcagcggt cttgtacacc
     1261 ctgttaccac ggttcagaag ttccccaact tactgaaccc tcgaaaaaac cgcctcccca
     1321 ggcggttttt tcgtttcaaa ggaagattac cgacagcaca gatagatctc aagaaaatca
     1381 ttcaatcaag cagaaacaaa gcaactttcc ttaccgcttg aatacacacg attacacaca
     1441 gagattgaca ccgtgtgtaa tcgtgtgtat tattgtcgaa agtttccgct tttgatggag
     1501 acgaaaggaa cccagctccg caaaagcaga gcacaaccat aaggtacgta gcatgagttc
     1561 ttctgaagac ataatccgaa gaattcagct cgatggatgg gaaaaagtgg cccaaaaagg
     1621 tagtcatgtg cagtttaaac atcctactaa aaagggtcgc gtaaccattc ctcacccgaa
     1681 caaagacctg cctaagggaa ctgtaaaaag tatccttaag caggccggga tagctgaatg
     1741 attcctcacc gggaaggctt tgccttcccg gtagagttca gaatgactta ctacgtttaa
     1801 tgagtaatga gagagattag gagttaacca tgtacattcc ggtagtgatc cataaggatg
     1861 ccgatacgga ttatggcgta actgttcctg atattcctgg atgttactca gcaggtgtaa
     1921 ccgtagatga agcattgcaa aatgctaaag aggcgattct ttttcatata gaaggattaa
     1981 ttgaggatgg cgtatatcat gaatttaaat tcagcgatat agaagcctta aaaacttatg
     2041 atgaatatca tgatggtatg ttttcgttgg ttgacgtaga tcttagcgca ttaacagatg
     2101 aagcgacaag atttaatgtt agctggccaa aatacgtatt aaccatttta gatggttcat
     2161 taaaagaaac tcatgagact cgttcaggtt acttagcaaa attagtgctt caagacttgc
     2221 gtagaaatag atcattccag gattaatgtg aatcaaggat agaactcata ggaggaacag
     2281 acatggcaaa agacagtaaa ggtagaaaat tcaataggat tgcgtcatac caaaagactt
     2341 tatccagtgg tgaagtaata actgttagag ctcatgtgag aagcaacaga aaagactccg
     2401 ctggtagtaa gtaagaaaaa aggctagaga aatctagcct ttttttattc attcattcaa
     2461 cttgctttct tttcatcgga cggcggtgaa tcattagcac cagaaacatt acgtaaaagt
     2521 tccaaaacac ctgactcacc aaactctttg tatagcctaa tcatttcctt ctgagcattg
     2581 gagcgcttct ggctattcag gttacgttcg cactctttca tcatcttttc aggttcagac
     2641 ttcagtcttg caagatcgct ctcgtcaaga tagaaagcaa cctgttttac tgcaccacca
     2701 acatcagcct tagtcgatat cgttctagcg gtgactggaa gatatttttg tttaagagaa
     2761 tgagccacag ctgacgcacg gttaacacac agatcggcca taatgttata gccggaagtg
     2821 gttaccacgt taccatcaca gagagctgca aaagtacaca aactggtttt atttaatttc
     2881 ttgattaact ccagcatcac ttcgttgcca gcgaagtgat tatgaagatt atgactagca
     2941 atttcaggag gatacaaatc ggttactttt tgcatttata gcacctgttt acagagaata
     3001 aataacaggt gacggtgtcc gtatgagcct tcgcgcatca aaaactgtga aaaatacctg
     3061 gcaagtcggt accaagttac tacataatgc agcaccactt gacaaacgcc ctaatcgggc
     3121 gtttgttgat caggtagatt cagttttcac gaaccgagtc accggcagct atcagaatcc
     3181 ttagtttctc aggccgaaga tctgatagct gcctcgtttt tcactgacaa cctcacgatc
     3241 atcagaattt cttattctac cctattccat aagcacacac atagcttttt tactgatctc
     3301 tcgcgattga tttacaaggg aattaccagt ctggcagatg aaattagcaa cagtactgtc
     3361 agcgtagaac tcatgtttaa acatacagca aaaagttgac aaaaaaatct cagctaattt
     3421 cacaatttac cataacatcc gtttcccgca ccgcctcaga cgccctatgt gcgcttgaac
     3481 aaccaaagca gtaaaacccc ctcacttctc cgcaaaaaaa gcccgcaaaa tggcgtacag
     3541 gccgtttggc ggcatgaatg attatgcaac ccagcacgca gagaccaggt tcagagagaa
     3601 acgcgaccga atcgcgtgtt tttgccgttc tgccaatgtg agaaacggtg aacgggcggg
     3661 caatttattg cgcggccgtg aagcgttggc caagcc
//
