LOCUS       NZ_OX291749             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1051 plasmid 4, complete sequence.
ACCESSION   NZ_OX291749
VERSION     NZ_OX291749.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201019
            Assembly: GCF_946413195.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:36:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,306
            CDSs (total)                      :: 5,172
            Genes (coding)                    :: 5,097
            CDSs (with protein)               :: 5,097
            Genes (RNA)                       :: 134
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 29 of 76
            Pseudo Genes (incomplete)         :: 46 of 76
            Pseudo Genes (internal stop)      :: 15 of 76
            Pseudo Genes (multiple problems)  :: 11 of 76
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291749.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1051"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="4"
     gene            complement(join(2988..3223,1..97))
                     /locus_tag="N4J69_RS26510"
     CDS             complement(join(2988..3223,1..97))
                     /locus_tag="N4J69_RS26510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(265..480)
                     /locus_tag="N4J69_RS26515"
                     /old_locus_tag="SAMEA13201019_05257"
     CDS             complement(265..480)
                     /locus_tag="N4J69_RS26515"
                     /old_locus_tag="SAMEA13201019_05257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(484..969)
                     /locus_tag="N4J69_RS26520"
                     /old_locus_tag="SAMEA13201019_05258"
     CDS             complement(484..969)
                     /locus_tag="N4J69_RS26520"
                     /old_locus_tag="SAMEA13201019_05258"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1004..1708)
                     /locus_tag="N4J69_RS26525"
                     /pseudo=""
     CDS             complement(<1004..1708)
                     /locus_tag="N4J69_RS26525"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1647..1970)
                     /locus_tag="N4J69_RS26530"
                     /old_locus_tag="SAMEA13201019_05259"
     CDS             complement(1647..1970)
                     /locus_tag="N4J69_RS26530"
                     /old_locus_tag="SAMEA13201019_05259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(2067..2258)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          2238..2721
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(168..1657)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 acggccacag gcgtgtaaat ccttctgaat atttcataaa ggtggtgcct atgacttcag
       61 ccacaatagc ccctcccagg aaaatatatg tattcataaa aatacctcat gttgaaaaat
      121 ttaaatatct ttacataaca actaattaat agaacccggc ttatcatagc gaaggaccat
      181 gatgctgcca ctgcgatcgt tccagctcca gcgctttctg gtgctgcacc gcccgctcct
      241 gctgccggtg agtttctatc gcgttcagcc tttcgacaac cggcgcagct gctcgctcaa
      301 actctgcacc tgcctgctca agaccgtgac gcgctcgttc agcgccgcgt tctcccgttg
      361 aataagacca gacatcgtcc gccattccgc gaaggcgttc tcccactcgt ccagcctttt
      421 cgagtagtcc tgctgtagct gctctaatgc gctcagcaac tgtttttcca gctccgtcat
      481 gtgctatttc cccgccagta tcatccagct cgagtcctct ccgaactgtc ccgcttccgg
      541 gttcaccctc acgcagcggc gtctctgctc gccgcaggtc gagagctgta cgccgctgtt
      601 cctctctgac agcatggcct gcgtgctctt ctgctcccgg atggtcgtat agttctcgag
      661 tatctgctgc ccctgccacc acagaatgcc cgcgctcgac gctatcagca gcgcggagac
      721 cagaacgatg gtcagccacg tctggctgac catgcgcagc atccctttcg tgcgctggct
      781 catggctgag gacagcttcc ggtcgtggtc gaggatggcg gcgctgattc tcttctcgct
      841 ttcgctcagt tccgctctga cagacttctc gtgctcgctg aatgcggctt tcagcatctc
      901 gccggtagtc tgctgctgcg ctttcgattt ctgctctaag tccttcgcca gcgttaaaag
      961 actgttcata gatggctccc ttcagtcgga tgtttcgccc cccgtccggg tcggcaatgc
     1021 tgatgctgct ttttgtggtg cgcaccacct caaaacctgc gctttccagc gcctcagtga
     1081 cgtcctgacg cgttttcagc tccccggatg aggcaagggc aagcaggccg ctcgtaatcg
     1141 cctgggcggc ttcctgcttc gcttccggca gcgcggaagg cgagaccagc acccgccggt
     1201 tctccggcgc gttcgggtca tgcagcccca gcctgccgtt cactatggtc tgccaggcat
     1261 cgatgcgcgg acggtcggcg cggtcgtaat acggctgtag ccgcttgccg gtcagaagct
     1321 ccgtgttcgg gatcaggaag ttcagctcca gccgcccctt gtcccggtgc tcaacccaca
     1381 gcacgctgta ctggtcttta tcgagtccgg gcatcagaac ccgctcgaaa ctcgccatca
     1441 gcttttcgcg ctggccgggc ggtaaatcct gttcggcaaa agacagaacg ccggaagtgt
     1501 actttttggc gtagggcgag gcgtcgataa gctcccggac ttcatccggc ttcccctgca
     1561 gaacgctggc gccgtcgcgc tggcgatctt tacccagcag ataatcgacc ggcccgccgc
     1621 cgccgccgcg cccccgagga tgaaacttaa cgatcatcat cagcaccctt ttccagtacg
     1681 gcatgccgca accgctcgag tccggcatcg atggccatca gcgcggcgac aatctgcacg
     1741 cggtcgtgtc cgcttccacc accggcgtta acctggcggg caatctggtt aaggttgttc
     1801 cccatgccgg caagctgacg aagcagcgcc ggcgagatcg acggaagttt gccggcgcgt
     1861 gcgggcttct cgtccaggca cgtctgccgc atccaggccg cgagttgctt accctcgcag
     1921 cgctccagca gacgccggtg ctcgtcctca gtcacccaca tggtgagcat tttgctgcgt
     1981 ttgtctgcca atccggcctc ctgataacgc cgggacggac gggaaatctt ttcccggtcg
     2041 gcacggtgtt ggacaagccg cagacgcggc agtggtttta gcgggtttcg gggcgcagcc
     2101 ctgaaccagt cacgtagcgc tagcggagtg tatactggct aaacatgtta tgacggagtg
     2161 gtaatttatg aaagtgcttc atgtgacagg ggaaaaatgc ggctgccggg cgtaagtgca
     2221 aaatgcaggt ggtgatgaaa tgacgcctcc tcgctcactc ggtcgctacg ctcctgccgt
     2281 gagactgcgg cgggcgttac cagctcacag attacgggat aagcaaatgc cgctcgaagc
     2341 aggaaaggcc aagaaaagga tgcggagttg ccgtttttcc ataggctccg cccccctgac
     2401 gagtatcacg aaaatgacgc tcaaatcagc ggtggcgaaa cccgatgcgg cttaaagata
     2461 ccaggcgttt ccccctggtg gctccctcgt gctcccccgc attcctgcct ttcggtttac
     2521 cggtgtcatt ccgctgttat ggccgcggtt tctcattcca cgcctgaaac tcggttccgg
     2581 gtaggcagtt cgctccagga tggactgtat gcacgaaccc cccgttcagt ccgactacca
     2641 cgcccgttcc ggtaactatc aacttgagtc caacccggaa agacacgaca aatcgccagt
     2701 ggcggtagcc attggtaact gggttcacgg agcagagatt gtagagaatg cctacagagt
     2761 tcttgaagtg aaagcctgag tgcggctaca ctgaaaggac agtttaggta tctgcgctcc
     2821 gtgaaagcca gttaccatcg gaacaaagag ttggtagctc tgaattccgg caaacgaacc
     2881 accgttggta gcggtggttt ttttgtttac agggaaaaag attacgcgca gaaagaaagg
     2941 atctcaagga aatccttttg ctttggccaa tatgcttcgg taaaaagtta atgcgcagaa
     3001 gattttgaaa aaatattaat aaccaaaact ccaacgcaaa taaggaacat tcctgcaatt
     3061 gcgggccaat caagtttttg accgctaacc aaccaaccag ctaggcttat tagtacaatt
     3121 cccgcaccag accaaattgc gtaagcaata ccggtaggta tattttccaa tgtttgggaa
     3181 agcagataaa aggcagcgca ataacttatt gcagttccta cag
//
