LOCUS       NZ_OX291748             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1051 plasmid 3, complete sequence.
ACCESSION   NZ_OX291748
VERSION     NZ_OX291748.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201019
            Assembly: GCF_946413195.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:36:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,306
            CDSs (total)                      :: 5,172
            Genes (coding)                    :: 5,097
            CDSs (with protein)               :: 5,097
            Genes (RNA)                       :: 134
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 29 of 76
            Pseudo Genes (incomplete)         :: 46 of 76
            Pseudo Genes (internal stop)      :: 15 of 76
            Pseudo Genes (multiple problems)  :: 11 of 76
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291748.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1051"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            complement(join(3658..3696,1..93))
                     /locus_tag="N4J69_RS26485"
     CDS             complement(join(3658..3696,1..93))
                     /locus_tag="N4J69_RS26485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            769..1125
                     /locus_tag="N4J69_RS26490"
                     /old_locus_tag="SAMEA13201019_05254"
     CDS             769..1125
                     /locus_tag="N4J69_RS26490"
                     /old_locus_tag="SAMEA13201019_05254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            1866..2384
                     /locus_tag="N4J69_RS26495"
                     /old_locus_tag="SAMEA13201019_05255"
     CDS             1866..2384
                     /locus_tag="N4J69_RS26495"
                     /old_locus_tag="SAMEA13201019_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(2595..3011)
                     /locus_tag="N4J69_RS26500"
     CDS             complement(2595..3011)
                     /locus_tag="N4J69_RS26500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(3100..3288)
                     /locus_tag="N4J69_RS26505"
     CDS             complement(3100..3288)
                     /locus_tag="N4J69_RS26505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     Typing          complement(2..340)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.135"
                     /coverage="82.0"
                     /evalue="1.03e-143"
ORIGIN
        1 cagtggcgct ttgtcgtgtc tttccgggtt ggactcaagt cgatagttac cggataaggt
       61 gcagtggtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc gaactgcctt
      121 cccggaaccg agtgtcaggc gtggaatgag ataaacgcgg ccataacagc ggaatgacat
      181 cggtaaaccg aaaggcagga acaggagagc gcacgaggga gccatcaggg ggaaacgcct
      241 ggtatcttta tagtcctgtc gggtttcgcc accactgatt tgagcgtcag atattgtgat
      301 gcttgtcagg ggggcggagc ctatggaaaa acagcccgct gggctgtggc cttttcccgt
      361 ctttctgcat gctcttactc cgtcatcctt ccctttttat ccccaccgct cgccgcagtg
      421 ttgactagcg tagtctgtca acgcgaggaa gcggaagtgc atttgactga tatgtcgcac
      481 ggtcatcgcg gggcttttgt tgacgatgca agataggcaa agtgttcccg tttgacgtca
      541 ttgcatgcct tcatccggtg acacgttgcc taccctgccg gtggctctcg tgcgggacag
      601 gatatgtttt gtagcaccgc cgtgggcgac gcgtccaaaa cgagggtgac ggacaggaaa
      661 tgtgttgtca ttaccgccgg tgttcctggc tttgacaaca cgcaggtcag ggcgaagccc
      721 cgacaccccg aatctcccct atactgtgcc aaaaaaaagg aggtctctat ggcatggcac
      781 agtgtgtcgc aggcacaggc attgaccgga aaaagtcggc ggacgctcta ccgtgatatg
      841 gcggcaggcc gcgtatcatg gcgcaataat gccgatggca ggcgggagtt agaaactacg
      901 gaattgctgc gcgtgtacgg cgaactgcag cctgatggca cggatgcgcg gcacacgctg
      961 tcacagcccg ttggcacaga agatcaggcg gtattactcg ccgaaatacg cgcattacgg
     1021 caggaggtcg ccgatttgaa agcggcggtc ttgcgtctgg agcaccatcc taccccggcg
     1081 gagccggcga tcgtcaaacg gtggtggcag cgctggcgcc gttgatcccc actgccgcgc
     1141 cgccggcttg gccaacgctt cacggccgcg caataaattg cccgcccgtt caccgtttct
     1201 cacattggca gaacggcaaa aacacgcgat tcggtcgcgt ttctctctga acctggtctc
     1261 tgcgtgctgg gttgcataat cattcatgcc gccaaacggc ctgtacgcca ttttgcgggc
     1321 tttttttgcg gagaagtgag ggggttttac tgctttggtt gttcaagcgc acatagggcg
     1381 tctgaggcgg tgcgggaaac ggatgttatg gtaaattgtg aaattagctg agattttttt
     1441 gtcaactttt tgctgtatgt ttaaacatga gttctacgct gacagtactg ttgctaattt
     1501 catctgccag actggtaatt cccttgtaaa tcaatcgcga gagatcagta aaaaagctat
     1561 gtgtgtgctt atggaatagg gtagaataag aaattctgat gatcgtgagg ttgtcagtga
     1621 aaaacgaggc agctatcaga tcttcggcct gagaaactaa ggattctgat agctgccggt
     1681 gactcggttc gtgaaaactg aatctacctg atcaacaaac gcccgattag ggcgtttgtc
     1741 aagtggtgct gcattatgta gtaacttggt accgacttgc caggtatttt tcacagtttt
     1801 tgatgcgcga aggctcatac ggacaccgtc acctgttatt tattctctgt aaacaggtgc
     1861 tataaatgca aaaagtaacc gatttgtatc ctcctgaaat tgctagtcat aatcttcata
     1921 atcacttcgc tggcaacgaa gtgatgctgg agttaatcaa gaaattaaat aaaaccagtt
     1981 tgtgtacttt tgcagctctc tgtgatggta acgtggtaac cacttccggc tataacatta
     2041 tggccgatct gtgtgttaac cgtgcgtcag ctgtggctca ttctcttaaa caaaaatatc
     2101 ttccagtcac cgctagaacg atatcgacta aggctgatgt tggtggtgca gtaaaacagg
     2161 ttgctttcta tcttgacgag agcgatcttg caagactgaa gtctgaacct gaaaagatga
     2221 tgaaagagtg cgaacgtaac ctgaatagcc agaagcgctc caatgctcag aaggaaatga
     2281 ttaggctata caaagagttt ggtgagtcag gtgttttgga acttttacgt aatgtttctg
     2341 gtgctaatga ttcaccgccg tccgatgaaa agaaagcaag ttgaatgaat gaataaaaaa
     2401 aggctagatt tctctagcct tttttcttac ttactaccag cggagtcttt tctgttgctt
     2461 ctcacatgag ctctaacagt tattacttca ccactggata aagtcttttg gtatgacgca
     2521 atcctattga attttctacc tttactgtct tttgccatgt ctgttcctcc tatgagttct
     2581 atccttgatt cacattaatc ctggaatgat ctatttctac gcaagtcttg aagcactaat
     2641 tttgctaagt aacctgaacg agtctcatga gtttctttta atgaaccatc taaaatggtt
     2701 aatacgtatt ttggccagct aacattaaat cttgtcgctt catctgttaa tgcgctaaga
     2761 tctacgtcaa ccaacgaaaa cataccatca tgatattcat cataagtttt taaggcttct
     2821 atatcgctga atttaaattc atgatatacg ccatcctcaa ttaatccttc tatatgaaaa
     2881 agaatcgcct ctttagcatt ttgcaatgct tcatctacgg ttacacctgc tgagtaacat
     2941 ccaggaatat caggaacagt tacgccataa tccgtatcgg catccttatg gatcactacc
     3001 ggaatgtaca tggttaactc ctaatctctc tcattactca ttaaacgtag taagtcattc
     3061 tgaactctac cgggaaggca aagccttccc ggtgaggaat cattcagcta tcccggcctg
     3121 cttaaggata ctttttacag ttcccttagg caggtctttg ttcgggtgag gaatggttac
     3181 gcgacccttt ttagtaggat gtttaaactg cacatgacta cctttttggg ccactttttc
     3241 ccatccatcg agctgaattc ttcggattat gtcttcagaa gaactcatgc tacgtacctt
     3301 atggttgtgc tctgcttttg cggagctggg ttcctttcgt ctccatcaaa agcggaaact
     3361 ttcgacaata atacacacga ttacacacgg tgtcaatctc tgtgtgtaat cgtgtgtatt
     3421 caagcggtaa ggaaagttgc tttgtttctg cttgattgaa tgattttctt gagatctatc
     3481 tgtgctgtcg gtaatcttcc tttgaaacga aaaaaccgcc tggggaggcg gttttttcga
     3541 gggttcagta agttggggaa cttctgaacc gtggtaacag ggtgtacaag accgctgaaa
     3601 ccaaattctg tcctttcagt gtagccgcag ttgggttgcc acttcaagaa ctctcattca
     3661 gttaatctct tgtacacctc taccaacggc tgctgc
//
