LOCUS       NZ_OX291729             2495 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1058 plasmid 6, complete sequence.
ACCESSION   NZ_OX291729
VERSION     NZ_OX291729.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201026
            Assembly: GCF_946411905.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:08:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,389
            CDSs (total)                      :: 5,260
            Genes (coding)                    :: 5,180
            CDSs (with protein)               :: 5,180
            Genes (RNA)                       :: 129
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 32 of 81
            Pseudo Genes (incomplete)         :: 51 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 12 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291729.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1058"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="6"
     gene            complement(193..420)
                     /locus_tag="N4J70_RS26935"
                     /old_locus_tag="SAMEA13201026_05355"
     CDS             complement(193..420)
                     /locus_tag="N4J70_RS26935"
                     /old_locus_tag="SAMEA13201026_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1628..1846
                     /locus_tag="N4J70_RS26940"
     CDS             1628..1846
                     /locus_tag="N4J70_RS26940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(2137..2322)
                     /locus_tag="N4J70_RS26945"
                     /old_locus_tag="SAMEA13201026_05358"
     CDS             complement(2137..2322)
                     /locus_tag="N4J70_RS26945"
                     /old_locus_tag="SAMEA13201026_05358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2003..2090
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(836..1364)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 cggtgcgggc aacggatgtt atggtaaatt cttgggggct tgattataaa ataccgcact
       61 tcctcttatg tcttgtgctt tttagacaac cctgaaagct tttagctttg gtgatgcaat
      121 ttgctgggat tttggcggag aaccacaggt aaagaaaaag gccacattag cggccttttt
      181 cggagaagat gctcagtgcg gaatttcgga gacttcttta acgtcggttt tattgatctg
      241 ctgtttgaca ccattcgcgt ctgtatagcc aagcaggcct gagtctgatt ctttaggttt
      301 gccgtcgctg acaatagtgc gaccgtcatt ggtgtgtatg gcatagcttg tgcgcgtgca
      361 gccggtgagg gctgaaagcg caactgccgc tgcgaacact gaaacaaaaa tctttttcaa
      421 agccagctcc ttttatccat atcagttttg gtcactaacc atctaactat aggtcatttt
      481 ttatgtgaaa agaggcttga tggtgggctg tatatcgagt taggcgcgag gtgctatggt
      541 caaagtgtgg tgtcaggcgg ggaggaggct tatatgagat gtaatccggc cgatacatat
      601 accaagatga tttaagtatt cctctttgtg aggttggatg tctaatttat aaaggatctt
      661 cttgagatcc tttttttccg cgcgtaatct cttgccctgt aaacgaaaaa accaccctgg
      721 caggtggttt ttcgaaggtt aggtaatcct ggcagatccc ctaaccgtgg taacagtctt
      781 gtgcgagaca tgtcaccaaa tttgtccttt cagtgtagcc tcactaaggc cgccacttca
      841 agaactcttg agacatctct cgcacatcct gtttgccaat ggccgttgcc aatggcgatt
      901 agtcgtgtct ttccgggttg gactcaagtt gatagttacc ggataaggcg cagcggtcgg
      961 actgaacggg gggttcgtgc atacagtcca tcctggagcg aactgccttc ccggaactga
     1021 gtgtcaggcg tggaatgaga aaccgcggcc ataacagcgg agtgacaccg gtaaaccgaa
     1081 aggcaggaat gcgggggagc acgagggagc caccaggggg aaacgcctgg tatctttaag
     1141 ccgcatcggg tttcgccacc actgatttga gcgtcagatt ctgtgatgct tgtcaggggg
     1201 gcggagccta tggaaaaacg gctttggcgc ggccttatgc tttcttcgtt aagtatcttc
     1261 ctggcatccc ccaggaaatt tctgatccat ccgtaagccc gtcccgctcg ccgcagccga
     1321 acgaccgagc ggagcgagtc agtgagcgag gaagcggaat atattctgta tcacattttc
     1381 tcctgacgcg ttttctttca ctttctgcgc ctgtcttatg tggcattaat gctatgtgtt
     1441 actgccatgc tacatcttaa gccagtatac actccgctag tgctccgtga ctggtccggc
     1501 gctgcgcccg gaacccgcct gtaccggttc agcagccgtt ccggcctgac tgcaattttt
     1561 tttttttcat ccctgcccgc taccctgtaa acctttcttc tgcgttgccg ttaacagtag
     1621 gtaagccatg tttggttttt cttccggagc cctgatgact cttagtgatg atgagcgaca
     1681 cctgcttgtg tccgttgttt cggtctggct acggcgtgcc ggaggggatg ccggagccat
     1741 gatgctggat gcataccggc agattttgtc tgaaaccgaa ccggccgtaa ggactgtcat
     1801 gctcgaattt cttgaatccg ttcgcattca ttacatttcg tcctgagcat tttctgtatt
     1861 tctgtccata cttaaacgag gcggccgtca cggacggtgg tcgtcgttcc atgatgctgt
     1921 tatggacgag tgagagtaat ctaatctaac ttgattgagt tccgggcgtg ccgcccggtt
     1981 ttttttgctg tttcccggtg tccgttccgg gacaggatgt gcatttgtaa taccgcgcac
     2041 gcgccggcat cacaaatacc ctggtcaggg ctgcgccccg acaccccgcc atcgcctcac
     2101 ggccgcgcac tgaattgcgc acccgttcac cgattttcac gcattttcct cgcctatctg
     2161 tgcgttcagc atggcgtaaa gcgcttcggc ctgatcgtgc aggtgctcac agcagccggc
     2221 agcctcatcc agatccatct gctcgagccg ctcaaggagg agaagtgtct gtgcgcggat
     2281 aaatttggcc atattgaggg cggcggattc ctgtctggtc actggtgatt ttccccgtct
     2341 ggtgatgatt tttgcgtgaa aagagcatgg cgtcattctg gtgcatagtc atgcatgccg
     2401 ttaaaattta acaggcgcgt ttctgacggg ttccggggtg gtttgttgtg gtttttgtca
     2461 tggtttcgtc aggaacgcgc tgaacgcgtc tcagg
//
