LOCUS       NZ_OX291728             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1058 plasmid 5, complete sequence.
ACCESSION   NZ_OX291728
VERSION     NZ_OX291728.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201026
            Assembly: GCF_946411905.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:08:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,389
            CDSs (total)                      :: 5,260
            Genes (coding)                    :: 5,180
            CDSs (with protein)               :: 5,180
            Genes (RNA)                       :: 129
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 32 of 81
            Pseudo Genes (incomplete)         :: 51 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 12 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291728.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1058"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="5"
     gene            complement(392..748)
                     /locus_tag="N4J70_RS26910"
                     /old_locus_tag="SAMEA13201026_05352"
     CDS             complement(392..748)
                     /locus_tag="N4J70_RS26910"
                     /old_locus_tag="SAMEA13201026_05352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            1424..1555
                     /locus_tag="N4J70_RS26915"
     CDS             1424..1555
                     /locus_tag="N4J70_RS26915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            1925..2113
                     /locus_tag="N4J70_RS26920"
     CDS             1925..2113
                     /locus_tag="N4J70_RS26920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            2202..2618
                     /locus_tag="N4J70_RS26925"
     CDS             2202..2618
                     /locus_tag="N4J70_RS26925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(2829..3347)
                     /locus_tag="N4J70_RS26930"
                     /old_locus_tag="SAMEA13201026_05354"
     CDS             complement(2829..3347)
                     /locus_tag="N4J70_RS26930"
                     /old_locus_tag="SAMEA13201026_05354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     Typing          1188..1532
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 accagtctgg cagatgaaat tagcaacagt actgtcagcg tagaactcat gtttaaacat
       61 acagcaaaaa gttgacaaaa aaatctcagc taatttcaca atttaccata acatccgttt
      121 cccgcaccgc ctcagacgcc ctatgtgcgc ttgaacaacc aaagcagtaa aaccccctca
      181 cttctccgca aaaaaagccc gcaaaatggc gtacaggccg tttggcggca tgaatgatta
      241 tgcaacccag cacgcagaga ccaggttcag agagaaacgc gaccgaatcg cgtgtttttg
      301 ccgttctgcc aatgtgagaa acggtgaacg ggcgggcaat ttattgcgcg gccgtgaagc
      361 gttggccaag ccggcggcgc ggcagtgggg atcaacggcg ccagcgctgc caccaccgtt
      421 tgacgatcgc cggctccgcc ggggtaggat ggtgctccag acgcaagacc gccgctttca
      481 aatcggcgac ctcctgccgt aatgcgcgta tttcggcgag taataccgcc tgatcttctg
      541 tgccaacggg ctgtgacagc gtgtgccgcg catccgtgcc atcaggctgc agttcgccgt
      601 acacgcgcag caattccgta gtttctaact cccgcctgcc atcggcatta ttgcgccatg
      661 atacgcggcc tgccgccata tcacggtaga gcgtccgccg actttttccg gtcaatgcct
      721 gtgcctgcga cacactgtgc catgccatag agacctcctt ttttttggca cagtataggg
      781 gagattcggg gtgtcggggc ttcgccctga cctgcgtgtt gtcaaagcca ggaacaccgg
      841 cggtaatgac aacacatttc ctgtccgtca ccctcgtttt ggacgcgtcg cccacggcgg
      901 tgctacaaaa catatcctgt cccgcacgag agccaccggc agggtaggca acgtgtcacc
      961 ggatgaaggc atgcaatgac gtcaaacggg aacactttgc ctatcttgca tcgtcaacaa
     1021 aagccccgcg atgaccgtgc gacatatcag tcaaatgcac ttccgcttcc tcgcgttgac
     1081 agactacgct agtcaacact gcggcgagcg gtggggataa aaagggaagg atgacggagt
     1141 aagagcatgc agaaagacgg gaaaaggcca cagcccagcg ggctgttttt ccataggctc
     1201 cgcccccctg acaagcatca caatatctga cgctcaaatc agtggtggcg aaacccgaca
     1261 ggactataaa gataccaggc gtttccccct gatggctccc tcgtgcgctc tcctgttcct
     1321 gcctttcggt ttaccgatgt cattccgctg ttatggccgc gtttatctca ttccacgcct
     1381 gacactcggt tccgggaagg cagttcgctc caagctggac tgtatgcacg aaccccccgt
     1441 tcagtccgac cactgcacct tatccggtaa ctatcgactt gagtccaacc cggaaagaca
     1501 cgacaaagcg ccactggcag cagccgttgg tagaggtgta caagagatta actgaatgag
     1561 agttcttgaa gtggcaaccc aactgcggct acactgaaag gacagaattt ggtttcagcg
     1621 gtcttgtaca ccctgttacc acggttcaga agttccccaa cttactgaac cctcgaaaaa
     1681 accgcctccc caggcggttt tttcgtttca aaggaagatt accgacagca cagatagatc
     1741 tcaagaaaat cattcaatca agcagaaaca aagcaacttt ccttaccgct tgaatacaca
     1801 cgattacaca cagagattga caccgtgtgt aatcgtgtgt attattgtcg aaagtttccg
     1861 cttttgatgg agacgaaagg aacccagctc cgcaaaagca gagcacaacc ataaggtacg
     1921 tagcatgagt tcttctgaag acataatccg aagaattcag ctcgatggat gggaaaaagt
     1981 ggcccaaaaa ggtagtcatg tgcagtttaa acatcctact aaaaagggtc gcgtaaccat
     2041 tcctcacccg aacaaagacc tgcctaaggg aactgtaaaa agtatcctta agcaggccgg
     2101 gatagctgaa tgattcctca ccgggaaggc tttgccttcc cggtagagtt cagaatgact
     2161 tactacgttt aatgagtaat gagagagatt aggagttaac catgtacatt ccggtagtga
     2221 tccataagga tgccgatacg gattatggcg taactgttcc tgatattcct ggatgttact
     2281 cagcaggtgt aaccgtagat gaagcattgc aaaatgctaa agaggcgatt ctttttcata
     2341 tagaaggatt aattgaggat ggcgtatatc atgaatttaa attcagcgat atagaagcct
     2401 taaaaactta tgatgaatat catgatggta tgttttcgtt ggttgacgta gatcttagcg
     2461 cattaacaga tgaagcgaca agatttaatg ttagctggcc aaaatacgta ttaaccattt
     2521 tagatggttc attaaaagaa actcatgaga ctcgttcagg ttacttagca aaattagtgc
     2581 ttcaagactt gcgtagaaat agatcattcc aggattaatg tgaatcaagg atagaactca
     2641 taggaggaac agacatggca aaagacagta aaggtagaaa attcaatagg attgcgtcat
     2701 accaaaagac tttatccagt ggtgaagtaa taactgttag agctcatgtg agaagcaaca
     2761 gaaaagactc cgctggtagt aagtaagaaa aaaggctaga gaaatctagc ctttttttat
     2821 tcattcattc aacttgcttt cttttcatcg gacggcggtg aatcattagc accagaaaca
     2881 ttacgtaaaa gttccaaaac acctgactca ccaaactctt tgtatagcct aatcatttcc
     2941 ttctgagcat tggagcgctt ctggctattc aggttacgtt cgcactcttt catcatcttt
     3001 tcaggttcag acttcagtct tgcaagatcg ctctcgtcaa gatagaaagc aacctgtttt
     3061 actgcaccac caacatcagc cttagtcgat atcgttctag cggtgactgg aagatatttt
     3121 tgtttaagag aatgagccac agctgacgca cggttaacac acagatcggc cataatgtta
     3181 tagccggaag tggttaccac gttaccatca cagagagctg caaaagtaca caaactggtt
     3241 ttatttaatt tcttgattaa ctccagcatc acttcgttgc cagcgaagtg attatgaaga
     3301 ttatgactag caatttcagg aggatacaaa tcggttactt tttgcattta tagcacctgt
     3361 ttacagagaa taaataacag gtgacggtgt ccgtatgagc cttcgcgcat caaaaactgt
     3421 gaaaaatacc tggcaagtcg gtaccaagtt actacataat gcagcaccac ttgacaaacg
     3481 ccctaatcgg gcgtttgttg atcaggtaga ttcagttttc acgaaccgag tcaccggcag
     3541 ctatcagaat ccttagtttc tcaggccgaa gatctgatag ctgcctcgtt tttcactgac
     3601 aacctcacga tcatcagaat ttcttattct accctattcc ataagcacac acatagcttt
     3661 tttactgatc tctcgcgatt gatttacaag ggaatt
//
