LOCUS       NZ_OX291708             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1052 plasmid 4, complete sequence.
ACCESSION   NZ_OX291708
VERSION     NZ_OX291708.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201021
            Assembly: GCF_946411625.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:21:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,245
            CDSs (total)                      :: 5,114
            Genes (coding)                    :: 5,041
            CDSs (with protein)               :: 5,041
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 29 of 74
            Pseudo Genes (incomplete)         :: 44 of 74
            Pseudo Genes (internal stop)      :: 15 of 74
            Pseudo Genes (multiple problems)  :: 11 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291708.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1052"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="4"
     gene            230..445
                     /locus_tag="N4J68_RS26210"
                     /old_locus_tag="SAMEA13201021_05200"
     CDS             230..445
                     /locus_tag="N4J68_RS26210"
                     /old_locus_tag="SAMEA13201021_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            613..945
                     /locus_tag="N4J68_RS26215"
     CDS             613..945
                     /locus_tag="N4J68_RS26215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            1963..2286
                     /locus_tag="N4J68_RS26220"
                     /old_locus_tag="SAMEA13201021_05203"
     CDS             1963..2286
                     /locus_tag="N4J68_RS26220"
                     /old_locus_tag="SAMEA13201021_05203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2495..>2929
                     /locus_tag="N4J68_RS26225"
                     /pseudo=""
     CDS             2495..>2929
                     /locus_tag="N4J68_RS26225"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     ARG             614..945
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          1676..1867
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          complement(1213..1693)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.867"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          2..543
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="85.246"
                     /coverage="100.0"
                     /evalue="3.13e-88"
     Typing          2274..3223
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.899"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gctgatagcg tcgagcgcgg gcattctgtg gtggcagggg cagcagatac tcgagaacta
       61 tacgaccatc cgggagcaga agagcacgca ggccatgctg tcagagagga acagcggcgt
      121 acagctctcg acctgcggcg agcagagacg ccgctgcgtg agggtgaacc cggaagcggg
      181 acagttcgga gaggactcga gctggatgat actggcgggg aaatagcaca tgacggagct
      241 ggaaaaacag ttgctgagcg cattagagca gctacagcag gactactcga aaaggctgga
      301 cgagtgggag aacgccttcg cggaatggcg gacgatgtct ggtcttattc aacgggagaa
      361 cgcggcgctg aacgagcgcg tcacggtctt gagcaggcag gtgcagagtt tgagcgagca
      421 gctgcgccgg ttgtcgaaag gctgaacgcg atagaaactc accggcagca ggagcgggcg
      481 gtgcagcacc agaaagcgct ggagctggaa cgatcgcagt ggcagcatca tggtccttcg
      541 ctatgataag ccgggttcta ttaattagtt gttatgtaaa gatatttaaa tttttcaaca
      601 tgaggtattt ttatgaatac atatattttc ctgggagggg ctattgtggc tgaagtcata
      661 ggcaccacct ttatgaaata ttcagaagga tttacacgcc tgtggccgtc tgtaggaact
      721 gcaataagtt attgcgctgc cttttatctg ctttcccaaa cattggaaaa tatacctacc
      781 ggtattgctt acgcaatttg gtctggtgcg ggaattgtac taataagcct agctggttgg
      841 ttggttagcg gtcaaaaact tgattggccc gcaattgcag gaatgttcct tatttgcgtt
      901 ggagttttgg ttattaatat tttttcaaaa tcttctgcgc attaactttt taccgaagca
      961 tattggccaa agcaaaagga tttccttgag atcctttctt tctgcgcgta atctttttcc
     1021 ctgtaaacaa aaaaaccacc gctaccaacg gtggttcgtt tgccggaatt cagagctacc
     1081 aactctttgt tccgatggta actggctttc acggagcgca gatacctaaa ctgtcctttc
     1141 agtgtagccg cactcaggct ttcacttcaa gaactctgta ggcattctct acaatctctg
     1201 ctccgtgaac ccagttacca atggctaccg ccactggcga tttgtcgtgt ctttccgggt
     1261 tggactcaag ttgatagtta ccggaacggg cgtggtagtc ggactgaacg gggggttcgt
     1321 gcatacagtc catcctggag cgaactgcct acccggaacc gagtttcagg cgtggaatga
     1381 gaaaccgcgg ccataacagc ggaatgacac cggtaaaccg aaaggcagga atgcggggga
     1441 gcacgaggga gccaccaggg ggaaacgcct ggtatcttta agccgcatcg ggtttcgcca
     1501 ccgctgattt gagcgtcatt ttcgtgatac tcgtcagggg ggcggagcct atggaaaaac
     1561 ggcaactccg catccttttc ttggcctttc ctgcttcgag cggcatttgc ttatcccgta
     1621 atctgtgagc tggtaacgcc cgccgcagtc tcacggcagg agcgtagcga ccgagtgagc
     1681 gaggaggcgt catttcatca ccacctgcat tttgcactta cgcccggcag ccgcattttt
     1741 cccctgtcac atgaagcact ttcataaatt accactccgt cataacatgt ttagccagta
     1801 tacactccgc tagcgctacg tgactggttc agggctgcgc cccgaaaccc gctaaaacca
     1861 ctgccgcgtc tgcggcttgt ccaacaccgt gccgaccggg aaaagatttc ccgtccgtcc
     1921 cggcgttatc aggaggccgg attggcagac aaacgcagca aaatgctcac catgtgggtg
     1981 actgaggacg agcaccggcg tctgctggag cgctgcgagg gtaagcaact cgcggcctgg
     2041 atgcggcaga cgtgcctgga cgagaagccc gcacgcgccg gcaaacttcc gtcgatctcg
     2101 ccggcgctgc ttcgtcagct tgccggcatg gggaacaacc ttaaccagat tgcccgccag
     2161 gttaacgccg gtggtggaag cggacacgac cgcgtgcaga ttgtcgccgc gctgatggcc
     2221 atcgatgccg gactcgagcg gttgcggcat gccgtactgg aaaagggtgc tgatgatgat
     2281 cgttaagttt catcctcggg ggcgcggcgg cggcggcggg ccggtcgatt atctgctggg
     2341 taaagatcgc cagcgcgacg gcgccagcgt tctgcagggg aagccggatg aagtccggga
     2401 gcttatcgac gcctcgccct acgccaaaaa gtacacttcc ggcgttctgt cttttgccga
     2461 acaggattta ccgcccggcc agcgcgaaaa gctgatggcg agtttcgagc gggttctgat
     2521 gcccggactc gataaagacc agtacagcgt gctgtgggtt gagcaccggg acaaggggcg
     2581 gctggagctg aacttcctga tcccgaacac ggagcttctg accggcaagc ggctacagcc
     2641 gtattacgac cgcgccgacc gtccgcgcat cgatgcctgg cagaccatag tgaacggcag
     2701 gctggggctg catgacccga acgcgccgga gaaccggcgg gtgctggtct cgccttccgc
     2761 gctgccggaa gcgaagcagg aagccgccca ggcgattacg agcggcctgc ttgcccttgc
     2821 ctcatccggg gagctgaaaa cgcgtcagga cgtcactgag gcgctggaaa gcgcaggttt
     2881 tgaggtggtg cgcaccacaa aaagcagcat cagcattgcc gacccggacg gggggcgaaa
     2941 catccgactg aagggagcca tctatgaaca gtcttttaac gctggcgaag gacttagagc
     3001 agaaatcgaa agcgcagcag cagactaccg gcgagatgct gaaagccgca ttcagcgagc
     3061 acgagaagtc tgtcagagcg gaactgagcg aaagcgagaa gagaatcagc gccgccatcc
     3121 tcgaccacga ccggaagctg tcctcagcca tgagccagcg cacgaaaggg atgctgcgca
     3181 tggtcagcca gacgtggctg accatcgttc tggtctccgc gct
//
