LOCUS       NZ_OX291707             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1052 plasmid 3, complete sequence.
ACCESSION   NZ_OX291707
VERSION     NZ_OX291707.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201021
            Assembly: GCF_946411625.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:21:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,245
            CDSs (total)                      :: 5,114
            Genes (coding)                    :: 5,041
            CDSs (with protein)               :: 5,041
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 29 of 74
            Pseudo Genes (incomplete)         :: 44 of 74
            Pseudo Genes (internal stop)      :: 15 of 74
            Pseudo Genes (multiple problems)  :: 11 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291707.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1052"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            388..519
                     /locus_tag="N4J68_RS26185"
     CDS             388..519
                     /locus_tag="N4J68_RS26185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            889..1077
                     /locus_tag="N4J68_RS26190"
     CDS             889..1077
                     /locus_tag="N4J68_RS26190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            1166..1582
                     /locus_tag="N4J68_RS26195"
                     /old_locus_tag="SAMEA13201021_05197"
     CDS             1166..1582
                     /locus_tag="N4J68_RS26195"
                     /old_locus_tag="SAMEA13201021_05197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(1793..2311)
                     /locus_tag="N4J68_RS26200"
                     /old_locus_tag="SAMEA13201021_05198"
     CDS             complement(1793..2311)
                     /locus_tag="N4J68_RS26200"
                     /old_locus_tag="SAMEA13201021_05198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(3052..3408)
                     /locus_tag="N4J68_RS26205"
                     /old_locus_tag="SAMEA13201021_05199"
     CDS             complement(3052..3408)
                     /locus_tag="N4J68_RS26205"
                     /old_locus_tag="SAMEA13201021_05199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     Typing          152..496
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 gtgcgacata tcagtcaaat gcacttccgc ttcctcgcgt tgacagacta cgctagtcaa
       61 cactgcggcg agcggtgggg ataaaaaggg aaggatgacg gagtaagagc atgcagaaag
      121 acgggaaaag gccacagccc agcgggctgt ttttccatag gctccgcccc cctgacaagc
      181 atcacaatat ctgacgctca aatcagtggt ggcgaaaccc gacaggacta taaagatacc
      241 aggcgtttcc ccctgatggc tccctcgtgc gctctcctgt tcctgccttt cggtttaccg
      301 atgtcattcc gctgttatgg ccgcgtttat ctcattccac gcctgacact cggttccggg
      361 aaggcagttc gctccaagct ggactgtatg cacgaacccc ccgttcagtc cgaccactgc
      421 accttatccg gtaactatcg acttgagtcc aacccggaaa gacacgacaa agcgccactg
      481 gcagcagccg ttggtagagg tgtacaagag attaactgaa tgagagttct tgaagtggca
      541 acccaactgc ggctacactg aaaggacaga atttggtttc agcggtcttg tacaccctgt
      601 taccacggtt cagaagttcc ccaacttact gaaccctcga aaaaaccgcc tccccaggcg
      661 gttttttcgt ttcaaaggaa gattaccgac agcacagata gatctcaaga aaatcattca
      721 atcaagcaga aacaaagcaa ctttccttac cgcttgaata cacacgatta cacacagaga
      781 ttgacaccgt gtgtaatcgt gtgtattatt gtcgaaagtt tccgcttttg atggagacga
      841 aaggaaccca gctccgcaaa agcagagcac aaccataagg tacgtagcat gagttcttct
      901 gaagacataa tccgaagaat tcagctcgat ggatgggaaa aagtggccca aaaaggtagt
      961 catgtgcagt ttaaacatcc tactaaaaag ggtcgcgtaa ccattcctca cccgaacaaa
     1021 gacctgccta agggaactgt aaaaagtatc cttaagcagg ccgggatagc tgaatgattc
     1081 ctcaccggga aggctttgcc ttcccggtag agttcagaat gacttactac gtttaatgag
     1141 taatgagaga gattaggagt taaccatgta cattccggta gtgatccata aggatgccga
     1201 tacggattat ggcgtaactg ttcctgatat tcctggatgt tactcagcag gtgtaaccgt
     1261 agatgaagca ttgcaaaatg ctaaagaggc gattcttttt catatagaag gattaattga
     1321 ggatggcgta tatcatgaat ttaaattcag cgatatagaa gccttaaaaa cttatgatga
     1381 atatcatgat ggtatgtttt cgttggttga cgtagatctt agcgcattaa cagatgaagc
     1441 gacaagattt aatgttagct ggccaaaata cgtattaacc attttagatg gttcattaaa
     1501 agaaactcat gagactcgtt caggttactt agcaaaatta gtgcttcaag acttgcgtag
     1561 aaatagatca ttccaggatt aatgtgaatc aaggatagaa ctcataggag gaacagacat
     1621 ggcaaaagac agtaaaggta gaaaattcaa taggattgcg tcataccaaa agactttatc
     1681 cagtggtgaa gtaataactg ttagagctca tgtgagaagc aacagaaaag actccgctgg
     1741 tagtaagtaa gaaaaaaggc tagagaaatc tagccttttt ttattcattc attcaacttg
     1801 ctttcttttc atcggacggc ggtgaatcat tagcaccaga aacattacgt aaaagttcca
     1861 aaacacctga ctcaccaaac tctttgtata gcctaatcat ttccttctga gcattggagc
     1921 gcttctggct attcaggtta cgttcgcact ctttcatcat cttttcaggt tcagacttca
     1981 gtcttgcaag atcgctctcg tcaagataga aagcaacctg ttttactgca ccaccaacat
     2041 cagccttagt cgatatcgtt ctagcggtga ctggaagata tttttgttta agagaatgag
     2101 ccacagctga cgcacggtta acacacagat cggccataat gttatagccg gaagtggtta
     2161 ccacgttacc atcacagaga gctgcaaaag tacacaaact ggttttattt aatttcttga
     2221 ttaactccag catcacttcg ttgccagcga agtgattatg aagattatga ctagcaattt
     2281 caggaggata caaatcggtt actttttgca tttatagcac ctgtttacag agaataaata
     2341 acaggtgacg gtgtccgtat gagccttcgc gcatcaaaaa ctgtgaaaaa tacctggcaa
     2401 gtcggtacca agttactaca taatgcagca ccacttgaca aacgccctaa tcgggcgttt
     2461 gttgatcagg tagattcagt tttcacgaac cgagtcaccg gcagctatca gaatccttag
     2521 tttctcaggc cgaagatctg atagctgcct cgtttttcac tgacaacctc acgatcatca
     2581 gaatttctta ttctacccta ttccataagc acacacatag cttttttact gatctctcgc
     2641 gattgattta caagggaatt accagtctgg cagatgaaat tagcaacagt actgtcagcg
     2701 tagaactcat gtttaaacat acagcaaaaa gttgacaaaa aaatctcagc taatttcaca
     2761 atttaccata acatccgttt cccgcaccgc ctcagacgcc ctatgtgcgc ttgaacaacc
     2821 aaagcagtaa aaccccctca cttctccgca aaaaaagccc gcaaaatggc gtacaggccg
     2881 tttggcggca tgaatgatta tgcaacccag cacgcagaga ccaggttcag agagaaacgc
     2941 gaccgaatcg cgtgtttttg ccgttctgcc aatgtgagaa acggtgaacg ggcgggcaat
     3001 ttattgcgcg gccgtgaagc gttggccaag ccggcggcgc ggcagtgggg atcaacggcg
     3061 ccagcgctgc caccaccgtt tgacgatcgc cggctccgcc ggggtaggat ggtgctccag
     3121 acgcaagacc gccgctttca aatcggcgac ctcctgccgt aatgcgcgta tttcggcgag
     3181 taataccgcc tgatcttctg tgccaacggg ctgtgacagc gtgtgccgcg catccgtgcc
     3241 atcaggctgc agttcgccgt acacgcgcag caattccgta gtttctaact cccgcctgcc
     3301 atcggcatta ttgcgccatg atacgcggcc tgccgccata tcacggtaga gcgtccgccg
     3361 actttttccg gtcaatgcct gtgcctgcga cacactgtgc catgccatag agacctcctt
     3421 ttttttggca cagtataggg gagattcggg gtgtcggggc ttcgccctga cctgcgtgtt
     3481 gtcaaagcca ggaacaccgg cggtaatgac aacacatttc ctgtccgtca ccctcgtttt
     3541 ggacgcgtcg cccacggcgg tgctacaaaa catatcctgt cccgcacgag agccaccggc
     3601 agggtaggca acgtgtcacc ggatgaaggc atgcaatgac gtcaaacggg aacactttgc
     3661 ctatcttgca tcgtcaacaa aagccccgcg atgacc
//
