LOCUS       NZ_OX291588             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1048 plasmid 3, complete sequence.
ACCESSION   NZ_OX291588
VERSION     NZ_OX291588.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201015
            Assembly: GCF_946406635.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:39:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,243
            CDSs (total)                      :: 5,112
            Genes (coding)                    :: 5,038
            CDSs (with protein)               :: 5,038
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 30 of 75
            Pseudo Genes (incomplete)         :: 44 of 75
            Pseudo Genes (internal stop)      :: 15 of 75
            Pseudo Genes (multiple problems)  :: 11 of 75
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291588.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1048"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            complement(join(3540..3696,1..362))
                     /locus_tag="N4J61_RS26170"
     CDS             complement(join(3540..3696,1..362))
                     /locus_tag="N4J61_RS26170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(1103..1459)
                     /locus_tag="N4J61_RS26175"
                     /old_locus_tag="SAMEA13201015_05198"
     CDS             complement(1103..1459)
                     /locus_tag="N4J61_RS26175"
                     /old_locus_tag="SAMEA13201015_05198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            2135..2266
                     /locus_tag="N4J61_RS26180"
     CDS             2135..2266
                     /locus_tag="N4J61_RS26180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            2636..2824
                     /locus_tag="N4J61_RS26185"
     CDS             2636..2824
                     /locus_tag="N4J61_RS26185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            2913..3329
                     /locus_tag="N4J61_RS26190"
     CDS             2913..3329
                     /locus_tag="N4J61_RS26190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     Typing          1899..2243
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 tctttcatca tcttttcagg ttcagacttc agtcttgcaa gatcgctctc gtcaagatag
       61 aaagcaacct gttttactgc accaccaaca tcagccttag tcgatatcgt tctagcggtg
      121 actggaagat atttttgttt aagagaatga gccacagctg acgcacggtt aacacacaga
      181 tcggccataa tgttatagcc ggaagtggtt accacgttac catcacagag agctgcaaaa
      241 gtacacaaac tggttttatt taatttcttg attaactcca gcatcacttc gttgccagcg
      301 aagtgattat gaagattatg actagcaatt tcaggaggat acaaatcggt tactttttgc
      361 atttatagca cctgtttaca gagaataaat aacaggtgac ggtgtccgta tgagccttcg
      421 cgcatcaaaa actgtgaaaa atacctggca agtcggtacc aagttactac ataatgcagc
      481 accacttgac aaacgcccta atcgggcgtt tgttgatcag gtagattcag ttttcacgaa
      541 ccgagtcacc ggcagctatc agaatcctta gtttctcagg ccgaagatct gatagctgcc
      601 tcgtttttca ctgacaacct cacgatcatc agaatttctt attctaccct attccataag
      661 cacacacata gcttttttac tgatctctcg cgattgattt acaagggaat taccagtctg
      721 gcagatgaaa ttagcaacag tactgtcagc gtagaactca tgtttaaaca tacagcaaaa
      781 agttgacaaa aaaatctcag ctaatttcac aatttaccat aacatccgtt tcccgcaccg
      841 cctcagacgc cctatgtgcg cttgaacaac caaagcagta aaaccccctc acttctccgc
      901 aaaaaaagcc cgcaaaatgg cgtacaggcc gtttggcggc atgaatgatt atgcaaccca
      961 gcacgcagag accaggttca gagagaaacg cgaccgaatc gcgtgttttt gccgttctgc
     1021 caatgtgaga aacggtgaac gggcgggcaa tttattgcgc ggccgtgaag cgttggccaa
     1081 gccggcggcg cggcagtggg gatcaacggc gccagcgctg ccaccaccgt ttgacgatcg
     1141 ccggctccgc cggggtagga tggtgctcca gacgcaagac cgccgctttc aaatcggcga
     1201 cctcctgccg taatgcgcgt atttcggcga gtaataccgc ctgatcttct gtgccaacgg
     1261 gctgtgacag cgtgtgccgc gcatccgtgc catcaggctg cagttcgccg tacacgcgca
     1321 gcaattccgt agtttctaac tcccgcctgc catcggcatt attgcgccat gatacgcggc
     1381 ctgccgccat atcacggtag agcgtccgcc gactttttcc ggtcaatgcc tgtgcctgcg
     1441 acacactgtg ccatgccata gagacctcct tttttttggc acagtatagg ggagattcgg
     1501 ggtgtcgggg cttcgccctg acctgcgtgt tgtcaaagcc aggaacaccg gcggtaatga
     1561 caacacattt cctgtccgtc accctcgttt tggacgcgtc gcccacggcg gtgctacaaa
     1621 acatatcctg tcccgcacga gagccaccgg cagggtaggc aacgtgtcac cggatgaagg
     1681 catgcaatga cgtcaaacgg gaacactttg cctatcttgc atcgtcaaca aaagccccgc
     1741 gatgaccgtg cgacatatca gtcaaatgca cttccgcttc ctcgcgttga cagactacgc
     1801 tagtcaacac tgcggcgagc ggtggggata aaaagggaag gatgacggag taagagcatg
     1861 cagaaagacg ggaaaaggcc acagcccagc gggctgtttt tccataggct ccgcccccct
     1921 gacaagcatc acaatatctg acgctcaaat cagtggtggc gaaacccgac aggactataa
     1981 agataccagg cgtttccccc tgatggctcc ctcgtgcgct ctcctgttcc tgcctttcgg
     2041 tttaccgatg tcattccgct gttatggccg cgtttatctc attccacgcc tgacactcgg
     2101 ttccgggaag gcagttcgct ccaagctgga ctgtatgcac gaaccccccg ttcagtccga
     2161 ccactgcacc ttatccggta actatcgact tgagtccaac ccggaaagac acgacaaagc
     2221 gccactggca gcagccgttg gtagaggtgt acaagagatt aactgaatga gagttcttga
     2281 agtggcaacc caactgcggc tacactgaaa ggacagaatt tggtttcagc ggtcttgtac
     2341 accctgttac cacggttcag aagttcccca acttactgaa ccctcgaaaa aaccgcctcc
     2401 ccaggcggtt ttttcgtttc aaaggaagat taccgacagc acagatagat ctcaagaaaa
     2461 tcattcaatc aagcagaaac aaagcaactt tccttaccgc ttgaatacac acgattacac
     2521 acagagattg acaccgtgtg taatcgtgtg tattattgtc gaaagtttcc gcttttgatg
     2581 gagacgaaag gaacccagct ccgcaaaagc agagcacaac cataaggtac gtagcatgag
     2641 ttcttctgaa gacataatcc gaagaattca gctcgatgga tgggaaaaag tggcccaaaa
     2701 aggtagtcat gtgcagttta aacatcctac taaaaagggt cgcgtaacca ttcctcaccc
     2761 gaacaaagac ctgcctaagg gaactgtaaa aagtatcctt aagcaggccg ggatagctga
     2821 atgattcctc accgggaagg ctttgccttc ccggtagagt tcagaatgac ttactacgtt
     2881 taatgagtaa tgagagagat taggagttaa ccatgtacat tccggtagtg atccataagg
     2941 atgccgatac ggattatggc gtaactgttc ctgatattcc tggatgttac tcagcaggtg
     3001 taaccgtaga tgaagcattg caaaatgcta aagaggcgat tctttttcat atagaaggat
     3061 taattgagga tggcgtatat catgaattta aattcagcga tatagaagcc ttaaaaactt
     3121 atgatgaata tcatgatggt atgttttcgt tggttgacgt agatcttagc gcattaacag
     3181 atgaagcgac aagatttaat gttagctggc caaaatacgt attaaccatt ttagatggtt
     3241 cattaaaaga aactcatgag actcgttcag gttacttagc aaaattagtg cttcaagact
     3301 tgcgtagaaa tagatcattc caggattaat gtgaatcaag gatagaactc ataggaggaa
     3361 cagacatggc aaaagacagt aaaggtagaa aattcaatag gattgcgtca taccaaaaga
     3421 ctttatccag tggtgaagta ataactgtta gagctcatgt gagaagcaac agaaaagact
     3481 ccgctggtag taagtaagaa aaaaggctag agaaatctag ccttttttta ttcattcatt
     3541 caacttgctt tcttttcatc ggacggcggt gaatcattag caccagaaac attacgtaaa
     3601 agttccaaaa cacctgactc accaaactct ttgtatagcc taatcatttc cttctgagca
     3661 ttggagcgct tctggctatt caggttacgt tcgcac
//
