LOCUS       NZ_OX291539             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1043 plasmid 4, complete sequence.
ACCESSION   NZ_OX291539
VERSION     NZ_OX291539.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201010
            Assembly: GCF_946406265.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:40:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,241
            CDSs (total)                      :: 5,110
            Genes (coding)                    :: 5,039
            CDSs (with protein)               :: 5,039
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 28 of 72
            Pseudo Genes (incomplete)         :: 43 of 72
            Pseudo Genes (internal stop)      :: 15 of 72
            Pseudo Genes (multiple problems)  :: 11 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291539.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1043"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="4"
     gene            complement(29..352)
                     /locus_tag="N4J63_RS26190"
                     /old_locus_tag="SAMEA13201010_05200"
     CDS             complement(29..352)
                     /locus_tag="N4J63_RS26190"
                     /old_locus_tag="SAMEA13201010_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(1370..1702)
                     /locus_tag="N4J63_RS26195"
     CDS             complement(1370..1702)
                     /locus_tag="N4J63_RS26195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1870..2085)
                     /locus_tag="N4J63_RS26200"
                     /old_locus_tag="SAMEA13201010_05203"
     CDS             complement(1870..2085)
                     /locus_tag="N4J63_RS26200"
                     /old_locus_tag="SAMEA13201010_05203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2089..2574)
                     /locus_tag="N4J63_RS26205"
                     /old_locus_tag="SAMEA13201010_05204"
     CDS             complement(2089..2574)
                     /locus_tag="N4J63_RS26205"
                     /old_locus_tag="SAMEA13201010_05204"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     ARG             complement(1371..1702)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(449..640)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          620..1103
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(33..352)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.196"
                     /coverage="100.0"
                     /evalue="8.510000000000001e-64"
     Typing          complement(1773..3220)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.753"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 gccgccgccg cgcccccgag gatgaaactt aacgatcatc atcagcaccc ttttccagta
       61 cggcatgccg caaccgctcg agtccggcat cgatggccat cagcgcggcg acaatctgca
      121 cgcggtcgtg tccgcttcca ccaccggcgt taacctggcg ggcaatctgg ttaaggttgt
      181 tccccatgcc ggcaagctga cgaagcagcg ccggcgagat cgacggaagt ttgccggcgc
      241 gtgcgggctt ctcgtccagg cacgtctgcc gcatccaggc cgcgagttgc ttaccctcgc
      301 agcgctccag cagacgccgg tgctcgtcct cagtcaccca catggtgagc attttgctgc
      361 gtttgtctgc caatccggcc tcctgataac gccgggacgg acgggaaatc ttttcccggt
      421 cggcacggtg ttggacaagc cgcagacgcg gcagtggttt tagcgggttt cggggcgcag
      481 ccctgaacca gtcacgtagc gctagcggag tgtatactgg ctaaacatgt tatgacggag
      541 tggtaattta tgaaagtgct tcatgtgaca ggggaaaaat gcggctgccg ggcgtaagtg
      601 caaaatgcag gtggtgatga aatgacgcct cctcgctcac tcggtcgcta cgctcctgcc
      661 gtgagactgc ggcgggcgtt accagctcac agattacggg ataagcaaat gccgctcgaa
      721 gcaggaaagg ccaagaaaag gatgcggagt tgccgttttt ccataggctc cgcccccctg
      781 acgagtatca cgaaaatgac gctcaaatca gcggtggcga aacccgatgc ggcttaaaga
      841 taccaggcgt ttccccctgg tggctccctc gtgctccccc gcattcctgc ctttcggttt
      901 accggtgtca ttccgctgtt atggccgcgg tttctcattc cacgcctgaa actcggttcc
      961 gggtaggcag ttcgctccag gatggactgt atgcacgaac cccccgttca gtccgactac
     1021 cacgcccgtt ccggtaacta tcaacttgag tccaacccgg aaagacacga caaatcgcca
     1081 gtggcggtag ccattggtaa ctgggttcac ggagcagaga ttgtagagaa tgcctacaga
     1141 gttcttgaag tgaaagcctg agtgcggcta cactgaaagg acagtttagg tatctgcgct
     1201 ccgtgaaagc cagttaccat cggaacaaag agttggtagc tctgaattcc ggcaaacgaa
     1261 ccaccgttgg tagcggtggt ttttttgttt acagggaaaa agattacgcg cagaaagaaa
     1321 ggatctcaag gaaatccttt tgctttggcc aatatgcttc ggtaaaaagt taatgcgcag
     1381 aagattttga aaaaatatta ataaccaaaa ctccaacgca aataaggaac attcctgcaa
     1441 ttgcgggcca atcaagtttt tgaccgctaa ccaaccaacc agctaggctt attagtacaa
     1501 ttcccgcacc agaccaaatt gcgtaagcaa taccggtagg tatattttcc aatgtttggg
     1561 aaagcagata aaaggcagcg caataactta ttgcagttcc tacagacggc cacaggcgtg
     1621 taaatccttc tgaatatttc ataaaggtgg tgcctatgac ttcagccaca atagcccctc
     1681 ccaggaaaat atatgtattc ataaaaatac ctcatgttga aaaatttaaa tatctttaca
     1741 taacaactaa ttaatagaac ccggcttatc atagcgaagg accatgatgc tgccactgcg
     1801 atcgttccag ctccagcgct ttctggtgct gcaccgcccg ctcctgctgc cggtgagttt
     1861 ctatcgcgtt cagcctttcg acaaccggcg cagctgctcg ctcaaactct gcacctgcct
     1921 gctcaagacc gtgacgcgct cgttcagcgc cgcgttctcc cgttgaataa gaccagacat
     1981 cgtccgccat tccgcgaagg cgttctccca ctcgtccagc cttttcgagt agtcctgctg
     2041 tagctgctct aatgcgctca gcaactgttt ttccagctcc gtcatgtgct atttccccgc
     2101 cagtatcatc cagctcgagt cctctccgaa ctgtcccgct tccgggttca ccctcacgca
     2161 gcggcgtctc tgctcgccgc aggtcgagag ctgtacgccg ctgttcctct ctgacagcat
     2221 ggcctgcgtg ctcttctgct cccggatggt cgtatagttc tcgagtatct gctgcccctg
     2281 ccaccacaga atgcccgcgc tcgacgctat cagcagcgcg gagaccagaa cgatggtcag
     2341 ccacgtctgg ctgaccatgc gcagcatccc tttcgtgcgc tggctcatgg ctgaggacag
     2401 cttccggtcg tggtcgagga tggcggcgct gattctcttc tcgctttcgc tcagttccgc
     2461 tctgacagac ttctcgtgct cgctgaatgc ggctttcagc atctcgccgg tagtctgctg
     2521 ctgcgctttc gatttctgct ctaagtcctt cgccagcgtt aaaagactgt tcatagatgg
     2581 ctcccttcag tcggatgttt cgccccccgt ccgggtcggc aatgctgatg ctgctttttg
     2641 tggtgcgcac cacctcaaaa cctgcgcttt ccagcgcctc agtgacgtcc tgacgcgttt
     2701 tcagctcccc ggatgaggca agggcaagca ggccgctcgt aatcgcctgg gcggcttcct
     2761 gcttcgcttc cggcagcgcg gaaggcgaga ccagcacccg ccggttctcc ggcgcgttcg
     2821 ggtcatgcag ccccagcctg ccgttcacta tggtctgcca ggcatcgatg cgcggacggt
     2881 cggcgcggtc gtaatacggc tgtagccgct tgccggtcag aagctccgtg ttcgggatca
     2941 ggaagttcag ctccagccgc cccttgtccc ggtgctcaac ccacagcacg ctgtactggt
     3001 ctttatcgag tccgggcatc agaacccgct cgaaactcgc catcagcttt tcgcgctggc
     3061 cgggcggtaa atcctgttcg gcaaaagaca gaacgccgga agtgtacttt ttggcgtagg
     3121 gcgaggcgtc gataagctcc cggacttcat ccggcttccc ctgcagaacg ctggcgccgt
     3181 cgcgctggcg atctttaccc agcagataat cgaccggccc gcc
//
