LOCUS       NZ_OX291538             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1043 plasmid 3, complete sequence.
ACCESSION   NZ_OX291538
VERSION     NZ_OX291538.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201010
            Assembly: GCF_946406265.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:40:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,241
            CDSs (total)                      :: 5,110
            Genes (coding)                    :: 5,039
            CDSs (with protein)               :: 5,039
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 28 of 72
            Pseudo Genes (incomplete)         :: 43 of 72
            Pseudo Genes (internal stop)      :: 15 of 72
            Pseudo Genes (multiple problems)  :: 11 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291538.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1043"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            join(3665..3696,1..100)
                     /locus_tag="N4J63_RS26165"
     CDS             join(3665..3696,1..100)
                     /locus_tag="N4J63_RS26165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            470..658
                     /locus_tag="N4J63_RS26170"
     CDS             470..658
                     /locus_tag="N4J63_RS26170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            747..1163
                     /locus_tag="N4J63_RS26175"
     CDS             747..1163
                     /locus_tag="N4J63_RS26175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(1374..1892)
                     /locus_tag="N4J63_RS26180"
                     /old_locus_tag="SAMEA13201010_05198"
     CDS             complement(1374..1892)
                     /locus_tag="N4J63_RS26180"
                     /old_locus_tag="SAMEA13201010_05198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(2633..2989)
                     /locus_tag="N4J63_RS26185"
                     /old_locus_tag="SAMEA13201010_05199"
     CDS             complement(2633..2989)
                     /locus_tag="N4J63_RS26185"
                     /old_locus_tag="SAMEA13201010_05199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
ORIGIN
        1 caccttatcc ggtaactatc gacttgagtc caacccggaa agacacgaca aagcgccact
       61 ggcagcagcc gttggtagag gtgtacaaga gattaactga atgagagttc ttgaagtggc
      121 aacccaactg cggctacact gaaaggacag aatttggttt cagcggtctt gtacaccctg
      181 ttaccacggt tcagaagttc cccaacttac tgaaccctcg aaaaaaccgc ctccccaggc
      241 ggttttttcg tttcaaagga agattaccga cagcacagat agatctcaag aaaatcattc
      301 aatcaagcag aaacaaagca actttcctta ccgcttgaat acacacgatt acacacagag
      361 attgacaccg tgtgtaatcg tgtgtattat tgtcgaaagt ttccgctttt gatggagacg
      421 aaaggaaccc agctccgcaa aagcagagca caaccataag gtacgtagca tgagttcttc
      481 tgaagacata atccgaagaa ttcagctcga tggatgggaa aaagtggccc aaaaaggtag
      541 tcatgtgcag tttaaacatc ctactaaaaa gggtcgcgta accattcctc acccgaacaa
      601 agacctgcct aagggaactg taaaaagtat ccttaagcag gccgggatag ctgaatgatt
      661 cctcaccggg aaggctttgc cttcccggta gagttcagaa tgacttacta cgtttaatga
      721 gtaatgagag agattaggag ttaaccatgt acattccggt agtgatccat aaggatgccg
      781 atacggatta tggcgtaact gttcctgata ttcctggatg ttactcagca ggtgtaaccg
      841 tagatgaagc attgcaaaat gctaaagagg cgattctttt tcatatagaa ggattaattg
      901 aggatggcgt atatcatgaa tttaaattca gcgatataga agccttaaaa acttatgatg
      961 aatatcatga tggtatgttt tcgttggttg acgtagatct tagcgcatta acagatgaag
     1021 cgacaagatt taatgttagc tggccaaaat acgtattaac cattttagat ggttcattaa
     1081 aagaaactca tgagactcgt tcaggttact tagcaaaatt agtgcttcaa gacttgcgta
     1141 gaaatagatc attccaggat taatgtgaat caaggataga actcatagga ggaacagaca
     1201 tggcaaaaga cagtaaaggt agaaaattca ataggattgc gtcataccaa aagactttat
     1261 ccagtggtga agtaataact gttagagctc atgtgagaag caacagaaaa gactccgctg
     1321 gtagtaagta agaaaaaagg ctagagaaat ctagcctttt tttattcatt cattcaactt
     1381 gctttctttt catcggacgg cggtgaatca ttagcaccag aaacattacg taaaagttcc
     1441 aaaacacctg actcaccaaa ctctttgtat agcctaatca tttccttctg agcattggag
     1501 cgcttctggc tattcaggtt acgttcgcac tctttcatca tcttttcagg ttcagacttc
     1561 agtcttgcaa gatcgctctc gtcaagatag aaagcaacct gttttactgc accaccaaca
     1621 tcagccttag tcgatatcgt tctagcggtg actggaagat atttttgttt aagagaatga
     1681 gccacagctg acgcacggtt aacacacaga tcggccataa tgttatagcc ggaagtggtt
     1741 accacgttac catcacagag agctgcaaaa gtacacaaac tggttttatt taatttcttg
     1801 attaactcca gcatcacttc gttgccagcg aagtgattat gaagattatg actagcaatt
     1861 tcaggaggat acaaatcggt tactttttgc atttatagca cctgtttaca gagaataaat
     1921 aacaggtgac ggtgtccgta tgagccttcg cgcatcaaaa actgtgaaaa atacctggca
     1981 agtcggtacc aagttactac ataatgcagc accacttgac aaacgcccta atcgggcgtt
     2041 tgttgatcag gtagattcag ttttcacgaa ccgagtcacc ggcagctatc agaatcctta
     2101 gtttctcagg ccgaagatct gatagctgcc tcgtttttca ctgacaacct cacgatcatc
     2161 agaatttctt attctaccct attccataag cacacacata gcttttttac tgatctctcg
     2221 cgattgattt acaagggaat taccagtctg gcagatgaaa ttagcaacag tactgtcagc
     2281 gtagaactca tgtttaaaca tacagcaaaa agttgacaaa aaaatctcag ctaatttcac
     2341 aatttaccat aacatccgtt tcccgcaccg cctcagacgc cctatgtgcg cttgaacaac
     2401 caaagcagta aaaccccctc acttctccgc aaaaaaagcc cgcaaaatgg cgtacaggcc
     2461 gtttggcggc atgaatgatt atgcaaccca gcacgcagag accaggttca gagagaaacg
     2521 cgaccgaatc gcgtgttttt gccgttctgc caatgtgaga aacggtgaac gggcgggcaa
     2581 tttattgcgc ggccgtgaag cgttggccaa gccggcggcg cggcagtggg gatcaacggc
     2641 gccagcgctg ccaccaccgt ttgacgatcg ccggctccgc cggggtagga tggtgctcca
     2701 gacgcaagac cgccgctttc aaatcggcga cctcctgccg taatgcgcgt atttcggcga
     2761 gtaataccgc ctgatcttct gtgccaacgg gctgtgacag cgtgtgccgc gcatccgtgc
     2821 catcaggctg cagttcgccg tacacgcgca gcaattccgt agtttctaac tcccgcctgc
     2881 catcggcatt attgcgccat gatacgcggc ctgccgccat atcacggtag agcgtccgcc
     2941 gactttttcc ggtcaatgcc tgtgcctgcg acacactgtg ccatgccata gagacctcct
     3001 tttttttggc acagtatagg ggagattcgg ggtgtcgggg cttcgccctg acctgcgtgt
     3061 tgtcaaagcc aggaacaccg gcggtaatga caacacattt cctgtccgtc accctcgttt
     3121 tggacgcgtc gcccacggcg gtgctacaaa acatatcctg tcccgcacga gagccaccgg
     3181 cagggtaggc aacgtgtcac cggatgaagg catgcaatga cgtcaaacgg gaacactttg
     3241 cctatcttgc atcgtcaaca aaagccccgc gatgaccgtg cgacatatca gtcaaatgca
     3301 cttccgcttc ctcgcgttga cagactacgc tagtcaacac tgcggcgagc ggtggggata
     3361 aaaagggaag gatgacggag taagagcatg cagaaagacg ggaaaaggcc acagcccagc
     3421 gggctgtttt tccataggct ccgcccccct gacaagcatc acaatatctg acgctcaaat
     3481 cagtggtggc gaaacccgac aggactataa agataccagg cgtttccccc tgatggctcc
     3541 ctcgtgcgct ctcctgttcc tgcctttcgg tttaccgatg tcattccgct gttatggccg
     3601 cgtttatctc attccacgcc tgacactcgg ttccgggaag gcagttcgct ccaagctgga
     3661 ctgtatgcac gaaccccccg ttcagtccga ccactg
//
