LOCUS       NZ_OX291531             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1054 plasmid 4, complete sequence.
ACCESSION   NZ_OX291531
VERSION     NZ_OX291531.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201022
            Assembly: GCF_946406125.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:47:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,242
            CDSs (total)                      :: 5,111
            Genes (coding)                    :: 5,039
            CDSs (with protein)               :: 5,039
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 29 of 73
            Pseudo Genes (incomplete)         :: 43 of 73
            Pseudo Genes (internal stop)      :: 15 of 73
            Pseudo Genes (multiple problems)  :: 11 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291531.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1054"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="4"
     gene            complement(12..335)
                     /locus_tag="N4J62_RS26195"
                     /old_locus_tag="SAMEA13201022_05202"
     CDS             complement(12..335)
                     /locus_tag="N4J62_RS26195"
                     /old_locus_tag="SAMEA13201022_05202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(1353..1685)
                     /locus_tag="N4J62_RS26200"
     CDS             complement(1353..1685)
                     /locus_tag="N4J62_RS26200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1853..2068)
                     /locus_tag="N4J62_RS26205"
                     /old_locus_tag="SAMEA13201022_05205"
     CDS             complement(1853..2068)
                     /locus_tag="N4J62_RS26205"
                     /old_locus_tag="SAMEA13201022_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2072..2557)
                     /locus_tag="N4J62_RS26210"
                     /old_locus_tag="SAMEA13201022_05206"
     CDS             complement(2072..2557)
                     /locus_tag="N4J62_RS26210"
                     /old_locus_tag="SAMEA13201022_05206"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     ARG             complement(1354..1685)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(432..623)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          603..1086
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(16..335)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.196"
                     /coverage="100.0"
                     /evalue="8.510000000000001e-64"
     Typing          complement(1756..3200)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.736"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 gaggatgaaa cttaacgatc atcatcagca cccttttcca gtacggcatg ccgcaaccgc
       61 tcgagtccgg catcgatggc catcagcgcg gcgacaatct gcacgcggtc gtgtccgctt
      121 ccaccaccgg cgttaacctg gcgggcaatc tggttaaggt tgttccccat gccggcaagc
      181 tgacgaagca gcgccggcga gatcgacgga agtttgccgg cgcgtgcggg cttctcgtcc
      241 aggcacgtct gccgcatcca ggccgcgagt tgcttaccct cgcagcgctc cagcagacgc
      301 cggtgctcgt cctcagtcac ccacatggtg agcattttgc tgcgtttgtc tgccaatccg
      361 gcctcctgat aacgccggga cggacgggaa atcttttccc ggtcggcacg gtgttggaca
      421 agccgcagac gcggcagtgg ttttagcggg tttcggggcg cagccctgaa ccagtcacgt
      481 agcgctagcg gagtgtatac tggctaaaca tgttatgacg gagtggtaat ttatgaaagt
      541 gcttcatgtg acaggggaaa aatgcggctg ccgggcgtaa gtgcaaaatg caggtggtga
      601 tgaaatgacg cctcctcgct cactcggtcg ctacgctcct gccgtgagac tgcggcgggc
      661 gttaccagct cacagattac gggataagca aatgccgctc gaagcaggaa aggccaagaa
      721 aaggatgcgg agttgccgtt tttccatagg ctccgccccc ctgacgagta tcacgaaaat
      781 gacgctcaaa tcagcggtgg cgaaacccga tgcggcttaa agataccagg cgtttccccc
      841 tggtggctcc ctcgtgctcc cccgcattcc tgcctttcgg tttaccggtg tcattccgct
      901 gttatggccg cggtttctca ttccacgcct gaaactcggt tccgggtagg cagttcgctc
      961 caggatggac tgtatgcacg aaccccccgt tcagtccgac taccacgccc gttccggtaa
     1021 ctatcaactt gagtccaacc cggaaagaca cgacaaatcg ccagtggcgg tagccattgg
     1081 taactgggtt cacggagcag agattgtaga gaatgcctac agagttcttg aagtgaaagc
     1141 ctgagtgcgg ctacactgaa aggacagttt aggtatctgc gctccgtgaa agccagttac
     1201 catcggaaca aagagttggt agctctgaat tccggcaaac gaaccaccgt tggtagcggt
     1261 ggtttttttg tttacaggga aaaagattac gcgcagaaag aaaggatctc aaggaaatcc
     1321 ttttgctttg gccaatatgc ttcggtaaaa agttaatgcg cagaagattt tgaaaaaata
     1381 ttaataacca aaactccaac gcaaataagg aacattcctg caattgcggg ccaatcaagt
     1441 ttttgaccgc taaccaacca accagctagg cttattagta caattcccgc accagaccaa
     1501 attgcgtaag caataccggt aggtatattt tccaatgttt gggaaagcag ataaaaggca
     1561 gcgcaataac ttattgcagt tcctacagac ggccacaggc gtgtaaatcc ttctgaatat
     1621 ttcataaagg tggtgcctat gacttcagcc acaatagccc ctcccaggaa aatatatgta
     1681 ttcataaaaa tacctcatgt tgaaaaattt aaatatcttt acataacaac taattaatag
     1741 aacccggctt atcatagcga aggaccatga tgctgccact gcgatcgttc cagctccagc
     1801 gctttctggt gctgcaccgc ccgctcctgc tgccggtgag tttctatcgc gttcagcctt
     1861 tcgacaaccg gcgcagctgc tcgctcaaac tctgcacctg cctgctcaag accgtgacgc
     1921 gctcgttcag cgccgcgttc tcccgttgaa taagaccaga catcgtccgc cattccgcga
     1981 aggcgttctc ccactcgtcc agccttttcg agtagtcctg ctgtagctgc tctaatgcgc
     2041 tcagcaactg tttttccagc tccgtcatgt gctatttccc cgccagtatc atccagctcg
     2101 agtcctctcc gaactgtccc gcttccgggt tcaccctcac gcagcggcgt ctctgctcgc
     2161 cgcaggtcga gagctgtacg ccgctgttcc tctctgacag catggcctgc gtgctcttct
     2221 gctcccggat ggtcgtatag ttctcgagta tctgctgccc ctgccaccac agaatgcccg
     2281 cgctcgacgc tatcagcagc gcggagacca gaacgatggt cagccacgtc tggctgacca
     2341 tgcgcagcat ccctttcgtg cgctggctca tggctgagga cagcttccgg tcgtggtcga
     2401 ggatggcggc gctgattctc ttctcgcttt cgctcagttc cgctctgaca gacttctcgt
     2461 gctcgctgaa tgcggctttc agcatctcgc cggtagtctg ctgctgcgct ttcgatttct
     2521 gctctaagtc cttcgccagc gttaaaagac tgttcataga tggctccctt cagtcggatg
     2581 tttcgccccc cgtccgggtc ggcaatgctg atgctgcttt ttgtggtgcg caccacctca
     2641 aaacctgcgc tttccagcgc ctcagtgacg tcctgacgcg ttttcagctc cccggatgag
     2701 gcaagggcaa gcaggccgct cgtaatcgcc tgggcggctt cctgcttcgc ttccggcagc
     2761 gcggaaggcg agaccagcac ccgccggttc tccggcgcgt tcgggtcatg cagccccagc
     2821 ctgccgttca ctatggtctg ccaggcatcg atgcgcggac ggtcggcgcg gtcgtaatac
     2881 ggctgtagcc gcttgccggt cagaagctcc gtgttcggga tcaggaagtt cagctccagc
     2941 cgccccttgt cccggtgctc aacccacagc acgctgtact ggtctttatc gagtccgggc
     3001 atcagaaccc gctcgaaact cgccatcagc ttttcgcgct ggccgggcgg taaatcctgt
     3061 tcggcaaaag acagaacgcc ggaagtgtac tttttggcgt agggcgaggc gtcgataagc
     3121 tcccggactt catccggctt cccctgcaga acgctggcgc cgtcgcgctg gcgatcttta
     3181 cccagcagat aatcgaccgg cccgccgccg ccgccgcgcc ccc
//
