LOCUS       NZ_OX291530             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1054 plasmid 3, complete sequence.
ACCESSION   NZ_OX291530
VERSION     NZ_OX291530.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201022
            Assembly: GCF_946406125.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:47:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,242
            CDSs (total)                      :: 5,111
            Genes (coding)                    :: 5,039
            CDSs (with protein)               :: 5,039
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 29 of 73
            Pseudo Genes (incomplete)         :: 43 of 73
            Pseudo Genes (internal stop)      :: 15 of 73
            Pseudo Genes (multiple problems)  :: 11 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291530.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1054"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            371..727
                     /locus_tag="N4J62_RS26170"
                     /old_locus_tag="SAMEA13201022_05198"
     CDS             371..727
                     /locus_tag="N4J62_RS26170"
                     /old_locus_tag="SAMEA13201022_05198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            1468..1986
                     /locus_tag="N4J62_RS26175"
                     /old_locus_tag="SAMEA13201022_05199"
     CDS             1468..1986
                     /locus_tag="N4J62_RS26175"
                     /old_locus_tag="SAMEA13201022_05199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(2197..2613)
                     /locus_tag="N4J62_RS26180"
                     /old_locus_tag="SAMEA13201022_05200"
     CDS             complement(2197..2613)
                     /locus_tag="N4J62_RS26180"
                     /old_locus_tag="SAMEA13201022_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(2702..2890)
                     /locus_tag="N4J62_RS26185"
     CDS             complement(2702..2890)
                     /locus_tag="N4J62_RS26185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            complement(3260..3391)
                     /locus_tag="N4J62_RS26190"
     CDS             complement(3260..3391)
                     /locus_tag="N4J62_RS26190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     Typing          complement(3284..3628)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 atccccaccg ctcgccgcag tgttgactag cgtagtctgt caacgcgagg aagcggaagt
       61 gcatttgact gatatgtcgc acggtcatcg cggggctttt gttgacgatg caagataggc
      121 aaagtgttcc cgtttgacgt cattgcatgc cttcatccgg tgacacgttg cctaccctgc
      181 cggtggctct cgtgcgggac aggatatgtt ttgtagcacc gccgtgggcg acgcgtccaa
      241 aacgagggtg acggacagga aatgtgttgt cattaccgcc ggtgttcctg gctttgacaa
      301 cacgcaggtc agggcgaagc cccgacaccc cgaatctccc ctatactgtg ccaaaaaaaa
      361 ggaggtctct atggcatggc acagtgtgtc gcaggcacag gcattgaccg gaaaaagtcg
      421 gcggacgctc taccgtgata tggcggcagg ccgcgtatca tggcgcaata atgccgatgg
      481 caggcgggag ttagaaacta cggaattgct gcgcgtgtac ggcgaactgc agcctgatgg
      541 cacggatgcg cggcacacgc tgtcacagcc cgttggcaca gaagatcagg cggtattact
      601 cgccgaaata cgcgcattac ggcaggaggt cgccgatttg aaagcggcgg tcttgcgtct
      661 ggagcaccat cctaccccgg cggagccggc gatcgtcaaa cggtggtggc agcgctggcg
      721 ccgttgatcc ccactgccgc gccgccggct tggccaacgc ttcacggccg cgcaataaat
      781 tgcccgcccg ttcaccgttt ctcacattgg cagaacggca aaaacacgcg attcggtcgc
      841 gtttctctct gaacctggtc tctgcgtgct gggttgcata atcattcatg ccgccaaacg
      901 gcctgtacgc cattttgcgg gctttttttg cggagaagtg agggggtttt actgctttgg
      961 ttgttcaagc gcacataggg cgtctgaggc ggtgcgggaa acggatgtta tggtaaattg
     1021 tgaaattagc tgagattttt ttgtcaactt tttgctgtat gtttaaacat gagttctacg
     1081 ctgacagtac tgttgctaat ttcatctgcc agactggtaa ttcccttgta aatcaatcgc
     1141 gagagatcag taaaaaagct atgtgtgtgc ttatggaata gggtagaata agaaattctg
     1201 atgatcgtga ggttgtcagt gaaaaacgag gcagctatca gatcttcggc ctgagaaact
     1261 aaggattctg atagctgccg gtgactcggt tcgtgaaaac tgaatctacc tgatcaacaa
     1321 acgcccgatt agggcgtttg tcaagtggtg ctgcattatg tagtaacttg gtaccgactt
     1381 gccaggtatt tttcacagtt tttgatgcgc gaaggctcat acggacaccg tcacctgtta
     1441 tttattctct gtaaacaggt gctataaatg caaaaagtaa ccgatttgta tcctcctgaa
     1501 attgctagtc ataatcttca taatcacttc gctggcaacg aagtgatgct ggagttaatc
     1561 aagaaattaa ataaaaccag tttgtgtact tttgcagctc tctgtgatgg taacgtggta
     1621 accacttccg gctataacat tatggccgat ctgtgtgtta accgtgcgtc agctgtggct
     1681 cattctctta aacaaaaata tcttccagtc accgctagaa cgatatcgac taaggctgat
     1741 gttggtggtg cagtaaaaca ggttgctttc tatcttgacg agagcgatct tgcaagactg
     1801 aagtctgaac ctgaaaagat gatgaaagag tgcgaacgta acctgaatag ccagaagcgc
     1861 tccaatgctc agaaggaaat gattaggcta tacaaagagt ttggtgagtc aggtgttttg
     1921 gaacttttac gtaatgtttc tggtgctaat gattcaccgc cgtccgatga aaagaaagca
     1981 agttgaatga atgaataaaa aaaggctaga tttctctagc cttttttctt acttactacc
     2041 agcggagtct tttctgttgc ttctcacatg agctctaaca gttattactt caccactgga
     2101 taaagtcttt tggtatgacg caatcctatt gaattttcta cctttactgt cttttgccat
     2161 gtctgttcct cctatgagtt ctatccttga ttcacattaa tcctggaatg atctatttct
     2221 acgcaagtct tgaagcacta attttgctaa gtaacctgaa cgagtctcat gagtttcttt
     2281 taatgaacca tctaaaatgg ttaatacgta ttttggccag ctaacattaa atcttgtcgc
     2341 ttcatctgtt aatgcgctaa gatctacgtc aaccaacgaa aacataccat catgatattc
     2401 atcataagtt tttaaggctt ctatatcgct gaatttaaat tcatgatata cgccatcctc
     2461 aattaatcct tctatatgaa aaagaatcgc ctctttagca ttttgcaatg cttcatctac
     2521 ggttacacct gctgagtaac atccaggaat atcaggaaca gttacgccat aatccgtatc
     2581 ggcatcctta tggatcacta ccggaatgta catggttaac tcctaatctc tctcattact
     2641 cattaaacgt agtaagtcat tctgaactct accgggaagg caaagccttc ccggtgagga
     2701 atcattcagc tatcccggcc tgcttaagga tactttttac agttccctta ggcaggtctt
     2761 tgttcgggtg aggaatggtt acgcgaccct ttttagtagg atgtttaaac tgcacatgac
     2821 tacctttttg ggccactttt tcccatccat cgagctgaat tcttcggatt atgtcttcag
     2881 aagaactcat gctacgtacc ttatggttgt gctctgcttt tgcggagctg ggttcctttc
     2941 gtctccatca aaagcggaaa ctttcgacaa taatacacac gattacacac ggtgtcaatc
     3001 tctgtgtgta atcgtgtgta ttcaagcggt aaggaaagtt gctttgtttc tgcttgattg
     3061 aatgattttc ttgagatcta tctgtgctgt cggtaatctt cctttgaaac gaaaaaaccg
     3121 cctggggagg cggttttttc gagggttcag taagttgggg aacttctgaa ccgtggtaac
     3181 agggtgtaca agaccgctga aaccaaattc tgtcctttca gtgtagccgc agttgggttg
     3241 ccacttcaag aactctcatt cagttaatct cttgtacacc tctaccaacg gctgctgcca
     3301 gtggcgcttt gtcgtgtctt tccgggttgg actcaagtcg atagttaccg gataaggtgc
     3361 agtggtcgga ctgaacgggg ggttcgtgca tacagtccag cttggagcga actgccttcc
     3421 cggaaccgag tgtcaggcgt ggaatgagat aaacgcggcc ataacagcgg aatgacatcg
     3481 gtaaaccgaa aggcaggaac aggagagcgc acgagggagc catcaggggg aaacgcctgg
     3541 tatctttata gtcctgtcgg gtttcgccac cactgatttg agcgtcagat attgtgatgc
     3601 ttgtcagggg ggcggagcct atggaaaaac agcccgctgg gctgtggcct tttcccgtct
     3661 ttctgcatgc tcttactccg tcatccttcc cttttt
//
