LOCUS       NZ_OX291480             2495 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1062 plasmid 7, complete sequence.
ACCESSION   NZ_OX291480
VERSION     NZ_OX291480.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201030
            Assembly: GCF_946404965.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:01:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,396
            CDSs (total)                      :: 5,266
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 32 of 81
            Pseudo Genes (incomplete)         :: 51 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 12 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291480.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1062"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="7"
     gene            73..300
                     /locus_tag="N4J64_RS26970"
                     /old_locus_tag="SAMEA13201030_05361"
     CDS             73..300
                     /locus_tag="N4J64_RS26970"
                     /old_locus_tag="SAMEA13201030_05361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            666..851
                     /locus_tag="N4J64_RS26975"
                     /old_locus_tag="SAMEA13201030_05362"
     CDS             666..851
                     /locus_tag="N4J64_RS26975"
                     /old_locus_tag="SAMEA13201030_05362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1142..1360)
                     /locus_tag="N4J64_RS26980"
     CDS             complement(1142..1360)
                     /locus_tag="N4J64_RS26980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(899..986)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1625..2153
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 cttttcacat aaaaaatgac ctatagttag atggttagtg accaaaactg atatggataa
       61 aaggagctgg ctttgaaaaa gatttttgtt tcagtgttcg cagcggcagt tgcgctttca
      121 gccctcaccg gctgcacgcg cacaagctat gccatacaca ccaatgacgg tcgcactatt
      181 gtcagcgacg gcaaacctaa agaatcagac tcaggcctgc ttggctatac agacgcgaat
      241 ggtgtcaaac agcagatcaa taaaaccgac gttaaagaag tctccgaaat tccgcactga
      301 gcatcttctc cgaaaaaggc cgctaatgtg gcctttttct ttacctgtgg ttctccgcca
      361 aaatcccagc aaattgcatc accaaagcta aaagctttca gggttgtcta aaaagcacaa
      421 gacataagag gaagtgcggt attttataat caagccccca agaatttacc ataacatccg
      481 ttgcccgcac cgcctgagac gcgttcagcg cgttcctgac gaaaccatga caaaaaccac
      541 aacaaaccac cccggaaccc gtcagaaacg cgcctgttaa attttaacgg catgcatgac
      601 tatgcaccag aatgacgcca tgctcttttc acgcaaaaat catcaccaga cggggaaaat
      661 caccagtgac cagacaggaa tccgccgccc tcaatatggc caaatttatc cgcgcacaga
      721 cacttctcct ccttgagcgg ctcgagcaga tggatctgga tgaggctgcc ggctgctgtg
      781 agcacctgca cgatcaggcc gaagcgcttt acgccatgct gaacgcacag ataggcgagg
      841 aaaatgcgtg aaaatcggtg aacgggtgcg caattcagtg cgcggccgtg aggcgatggc
      901 ggggtgtcgg ggcgcagccc tgaccagggt atttgtgatg ccggcgcgtg cgcggtatta
      961 caaatgcaca tcctgtcccg gaacggacac cgggaaacag caaaaaaaac cgggcggcac
     1021 gcccggaact caatcaagtt agattagatt actctcactc gtccataaca gcatcatgga
     1081 acgacgacca ccgtccgtga cggccgcctc gtttaagtat ggacagaaat acagaaaatg
     1141 ctcaggacga aatgtaatga atgcgaacgg attcaagaaa ttcgagcatg acagtcctta
     1201 cggccggttc ggtttcagac aaaatctgcc ggtatgcatc cagcatcatg gctccggcat
     1261 cccctccggc acgccgtagc cagaccgaaa caacggacac aagcaggtgt cgctcatcat
     1321 cactaagagt catcagggct ccggaagaaa aaccaaacat ggcttaccta ctgttaacgg
     1381 caacgcagaa gaaaggttta cagggtagcg ggcagggatg aaaaaaaaaa aattgcagtc
     1441 aggccggaac ggctgctgaa ccggtacagg cgggttccgg gcgcagcgcc ggaccagtca
     1501 cggagcacta gcggagtgta tactggctta agatgtagca tggcagtaac acatagcatt
     1561 aatgccacat aagacaggcg cagaaagtga aagaaaacgc gtcaggagaa aatgtgatac
     1621 agaatatatt ccgcttcctc gctcactgac tcgctccgct cggtcgttcg gctgcggcga
     1681 gcgggacggg cttacggatg gatcagaaat ttcctggggg atgccaggaa gatacttaac
     1741 gaagaaagca taaggccgcg ccaaagccgt ttttccatag gctccgcccc cctgacaagc
     1801 atcacagaat ctgacgctca aatcagtggt ggcgaaaccc gatgcggctt aaagatacca
     1861 ggcgtttccc cctggtggct ccctcgtgct cccccgcatt cctgcctttc ggtttaccgg
     1921 tgtcactccg ctgttatggc cgcggtttct cattccacgc ctgacactca gttccgggaa
     1981 ggcagttcgc tccaggatgg actgtatgca cgaacccccc gttcagtccg accgctgcgc
     2041 cttatccggt aactatcaac ttgagtccaa cccggaaaga cacgactaat cgccattggc
     2101 aacggccatt ggcaaacagg atgtgcgaga gatgtctcaa gagttcttga agtggcggcc
     2161 ttagtgaggc tacactgaaa ggacaaattt ggtgacatgt ctcgcacaag actgttacca
     2221 cggttagggg atctgccagg attacctaac cttcgaaaaa ccacctgcca gggtggtttt
     2281 ttcgtttaca gggcaagaga ttacgcgcgg aaaaaaagga tctcaagaag atcctttata
     2341 aattagacat ccaacctcac aaagaggaat acttaaatca tcttggtata tgtatcggcc
     2401 ggattacatc tcatataagc ctcctccccg cctgacacca cactttgacc atagcacctc
     2461 gcgcctaact cgatatacag cccaccatca agcct
//
