LOCUS       NZ_OX291479             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1062 plasmid 6, complete sequence.
ACCESSION   NZ_OX291479
VERSION     NZ_OX291479.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201030
            Assembly: GCF_946404965.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:01:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,396
            CDSs (total)                      :: 5,266
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 32 of 81
            Pseudo Genes (incomplete)         :: 51 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 12 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291479.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1062"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="6"
     gene            complement(312..635)
                     /locus_tag="N4J64_RS26950"
                     /old_locus_tag="SAMEA13201030_05356"
     CDS             complement(312..635)
                     /locus_tag="N4J64_RS26950"
                     /old_locus_tag="SAMEA13201030_05356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(1653..1985)
                     /locus_tag="N4J64_RS26955"
     CDS             complement(1653..1985)
                     /locus_tag="N4J64_RS26955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(2153..2368)
                     /locus_tag="N4J64_RS26960"
                     /old_locus_tag="SAMEA13201030_05359"
     CDS             complement(2153..2368)
                     /locus_tag="N4J64_RS26960"
                     /old_locus_tag="SAMEA13201030_05359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2372..2857)
                     /locus_tag="N4J64_RS26965"
                     /old_locus_tag="SAMEA13201030_05360"
     CDS             complement(2372..2857)
                     /locus_tag="N4J64_RS26965"
                     /old_locus_tag="SAMEA13201030_05360"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     ARG             complement(1654..1985)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(732..923)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          903..1386
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(3..322)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.196"
                     /coverage="86.0"
                     /evalue="6.32e-60"
     Typing          complement(2056..3221)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.793"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ggaagttcag ctccagccgc cccttgtccc ggtgctcaac ccacagcacg ctgtactggt
       61 ctttatcgag tccgggcatc agaacccgct cgaaactcgc catcagcttt tcgcgctggc
      121 cgggcggtaa atcctgttcg gcaaaagaca gaacgccgga agtgtacttt ttggcgtagg
      181 gcgaggcgtc gataagctcc cggacttcat ccggcttccc ctgcagaacg ctggcgccgt
      241 cgcgctggcg atctttaccc agcagataat cgaccggccc gccgccgccg ccgcgccccc
      301 gaggatgaaa cttaacgatc atcatcagca cccttttcca gtacggcatg ccgcaaccgc
      361 tcgagtccgg catcgatggc catcagcgcg gcgacaatct gcacgcggtc gtgtccgctt
      421 ccaccaccgg cgttaacctg gcgggcaatc tggttaaggt tgttccccat gccggcaagc
      481 tgacgaagca gcgccggcga gatcgacgga agtttgccgg cgcgtgcggg cttctcgtcc
      541 aggcacgtct gccgcatcca ggccgcgagt tgcttaccct cgcagcgctc cagcagacgc
      601 cggtgctcgt cctcagtcac ccacatggtg agcattttgc tgcgtttgtc tgccaatccg
      661 gcctcctgat aacgccggga cggacgggaa atcttttccc ggtcggcacg gtgttggaca
      721 agccgcaggc gcggcagtgg ttttagcggg tttcggggcg cagccctgaa ccagtcacgt
      781 agcgctagcg gagtgtatac tggctaaaca tgttatgacg gagtggcaat ttatgaaagt
      841 gcttcatgtg acaggggaaa aatgcggctg ccgggcgtaa gtgcaaaatg caggtggtga
      901 tgaaatgacg cctcctcgct cactcggtcg ctacgctcct gccgtgagac tgcggcgggc
      961 gttaccagct cacagattac gggataagca aatgccgctc gaagcaggaa aggccaagaa
     1021 aaggatgcgg agttgccgtt tttccatagg ctccgccccc ctgacgagta tcacgaaaat
     1081 gacgctcaaa tcagcggtgg cgaaacccga tgcggcttaa agataccagg cgtttccccc
     1141 tggtggctcc ctcgtgctcc cccgcattcc tgcctttcgg tttaccggtg tcattccgct
     1201 gttatggccg cggtttctca ttccacgcct gaaactcggt tccgggtagg cagttcgctc
     1261 caggatggac tgtatgcacg aaccccccgt tcagtccgac taccacgccc gttccggtaa
     1321 ctatcaactt gagtccaacc cggaaagaca cgacaaatcg ccagtggcgg tagccattgg
     1381 taactgggtt cacggagcag agattgtaga gaatgcctac agagttcttg aagtgaaagc
     1441 ctgagtgcgg ctacactgaa aggacagttt aggtatctgc gctccgtgaa agccagttac
     1501 catcggaaca aagagttggt agctctgaat tccggcaaac gaaccaccgt tggtagcggt
     1561 ggtttttttg tttacaggga aaaagattac gcgcagaaag aaaggatctc aaggaaatcc
     1621 ttttgctttg gccaatatgc ttcggtaaaa agttaatgcg cagaagattt tgaaaaaata
     1681 ttaataacca aaactccaac gcaaataagg aacattcctg caattgcggg ccaatcaagt
     1741 ttttgaccgc taaccaacca accagctagg cttattagta caattcccgc accagaccaa
     1801 attgcgtaag caataccggt aggtatattt tccaatgttt gggaaagcag ataaaaggca
     1861 gcgcaataac ttattgcagt tcctacagac ggccacaggc gtgtaaatcc ttctgaatat
     1921 ttcataaagg tggtgcctat gacttcagcc acaatagccc ctcccaggaa aatatatgta
     1981 ttcataaaaa tacctcatgt tgaaaaattt aaatatcttt acataacaac taattaatag
     2041 aacccggctt atcatagcga aggaccatga tgctgccact gcgatcgttc cagctccagc
     2101 gctttctggt gctgcaccgc ccgctcctgc tgccggtgag tttctatcgc gttcagcctt
     2161 tcgacaaccg gcgcagctgc tcgctcaaac tctgcacctg cctgctcaag accgtgacgc
     2221 gctcgttcag cgccgcgttc tcccgttgaa taagaccaga catcgtccgc cattccgcga
     2281 aggcgttctc ccactcgtcc agccttttcg agtagtcctg ctgtagctgc tctaatgcgc
     2341 tcagcaactg tttttccagc tccgtcatgt gctatttccc cgccagtatc atccagctcg
     2401 agtcctctcc gaactgtccc gcttccgggt tcaccctcac gcagcggcgt ctctgctcgc
     2461 cgcaggtcga gagctgtacg ccgctgttcc tctctgacag catggcctgc gtgctcttct
     2521 gctcccggat ggtcgtatag ttctcgagta tctgctgccc ctgccaccac agaatgcccg
     2581 cgctcgacgc tatcagcagc gcggagacca gaacgatggt cagccacgtc tggctgacca
     2641 tgcgcagcat ccctttcgtg cgctggctca tggctgagga cagcttccgg tcgtggtcga
     2701 ggatggcggc gctgattctc ttctcgcttt cgctcagttc cgctctgaca gacttctcgt
     2761 gctcgctgaa tgcggctttc agcatctcgc cggtagtctg ctgctgcgct ttcgatttct
     2821 gctctaagtc cttcgccagc gttaaaagac tgttcataga tggctccctt cagtcggatg
     2881 tttcgccccc cgtccgggtc ggcaatgctg atgctgcttt ttgtggtgcg caccacctca
     2941 aaacctgcgc tttccagcgc ctcagtgacg tcctgacgcg ttttcagctc cccggatgag
     3001 gcaagggcaa gcaggccgct cgtaatcgcc tgggcggctt cctgcttcgc ttccggcagc
     3061 gcggaaggcg agaccagcac ccgccggttc tccggcgcgt tcgggtcatg cagccccagc
     3121 ctgccgttca ctatggtctg ccaggcatcg atgcgcggac ggtcggcgcg gtcgtaatac
     3181 ggctgtagcc gcttgccggt cagaagctcc gtgttcggga tca
//
