LOCUS       NZ_OX291478             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1062 plasmid 5, complete sequence.
ACCESSION   NZ_OX291478
VERSION     NZ_OX291478.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201030
            Assembly: GCF_946404965.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:01:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,396
            CDSs (total)                      :: 5,266
            Genes (coding)                    :: 5,186
            CDSs (with protein)               :: 5,186
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 32 of 81
            Pseudo Genes (incomplete)         :: 51 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 12 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291478.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1062"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="5"
     gene            join(3503..3696,1..325)
                     /locus_tag="N4J64_RS26925"
     CDS             join(3503..3696,1..325)
                     /locus_tag="N4J64_RS26925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(536..952)
                     /locus_tag="N4J64_RS26930"
     CDS             complement(536..952)
                     /locus_tag="N4J64_RS26930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(1041..1229)
                     /locus_tag="N4J64_RS26935"
     CDS             complement(1041..1229)
                     /locus_tag="N4J64_RS26935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            complement(1599..1730)
                     /locus_tag="N4J64_RS26940"
     CDS             complement(1599..1730)
                     /locus_tag="N4J64_RS26940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            2406..2762
                     /locus_tag="N4J64_RS26945"
                     /old_locus_tag="SAMEA13201030_05355"
     CDS             2406..2762
                     /locus_tag="N4J64_RS26945"
                     /old_locus_tag="SAMEA13201030_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     Typing          complement(1623..1967)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 ccgtgcgtca gctgtggctc attctcttaa acaaaaatat cttccagtca ccgctagaac
       61 gatatcgact aaggctgatg ttggtggtgc agtaaaacag gttgctttct atcttgacga
      121 gagcgatctt gcaagactga agtctgaacc tgaaaagatg atgaaagagt gcgaacgtaa
      181 cctgaatagc cagaagcgct ccaatgctca gaaggaaatg attaggctat acaaagagtt
      241 tggtgagtca ggtgttttgg aacttttacg taatgtttct ggtgctaatg attcaccgcc
      301 gtccgatgaa aagaaagcaa gttgaatgaa tgaataaaaa aaggctagat ttctctagcc
      361 ttttttctta cttactacca gcggagtctt ttctgttgct tctcacatga gctctaacag
      421 ttattacttc accactggat aaagtctttt ggtatgacgc aatcctattg aattttctac
      481 ctttactgtc ttttgccatg tctgttcctc ctatgagttc tatccttgat tcacattaat
      541 cctggaatga tctatttcta cgcaagtctt gaagcactaa ttttgctaag taacctgaac
      601 gagtctcatg agtttctttt aatgaaccat ctaaaatggt taatacgtat tttggccagc
      661 taacattaaa tcttgtcgct tcatctgtta atgcgctaag atctacgtca accaacgaaa
      721 acataccatc atgatattca tcataagttt ttaaggcttc tatatcgctg aatttaaatt
      781 catgatatac gccatcctca attaatcctt ctatatgaaa aagaatcgcc tctttagcat
      841 tttgcaatgc ttcatctacg gttacacctg ctgagtaaca tccaggaata tcaggaacag
      901 ttacgccata atccgtatcg gcatccttat ggatcactac cggaatgtac atggttaact
      961 cctaatctct ctcattactc attaaacgta gtaagtcatt ctgaactcta ccgggaaggc
     1021 aaagccttcc cggtgaggaa tcattcagct atcccggcct gcttaaggat actttttaca
     1081 gttcccttag gcaggtcttt gttcgggtga ggaatggtta cgcgaccctt tttagtagga
     1141 tgtttaaact gcacatgact acctttttgg gccacttttt cccatccatc gagctgaatt
     1201 cttcggatta tgtcttcaga agaactcatg ctacgtacct tatggttgtg ctctgctttt
     1261 gcggagctgg gttcctttcg tctccatcaa aagcggaaac tttcgacaat aatacacacg
     1321 attacacacg gtgtcaatct ctgtgtgtaa tcgtgtgtat tcaagcggta aggaaagttg
     1381 ctttgtttct gcttgattga atgattttct tgagatctat ctgtgctgtc ggtaatcttc
     1441 ctttgaaacg aaaaaaccgc ctggggaggc ggttttttcg agggttcagt aagttgggga
     1501 acttctgaac cgtggtaaca gggtgtacaa gaccgctgaa accaaattct gtcctttcag
     1561 tgtagccgca gttgggttgc cacttcaaga actctcattc agttaatctc ttgtacacct
     1621 ctaccaacgg ctgctgccag tggcgctttg tcgtgtcttt ccgggttgga ctcaagtcga
     1681 tagttaccgg ataaggtgca gtggtcggac tgaacggggg gttcgtgcat acagtccagc
     1741 ttggagcgaa ctgccttccc ggaaccgagt gtcaggcgtg gaatgagata aacgcggcca
     1801 taacagcgga atgacatcgg taaaccgaaa ggcaggaaca ggagagcgca cgagggagcc
     1861 atcaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc actgatttga
     1921 gcgtcagata ttgtgatgct tgtcaggggg gcggagccta tggaaaaaca gcccgctggg
     1981 ctgtggcctt ttcccgtctt tctgcatgct cttactccgt catccttccc tttttatccc
     2041 caccgctcgc cgcagtgttg actagcgtag tctgtcaacg cgaggaagcg gaagtgcatt
     2101 tgactgatat gtcgcacggt catcgcgggg cttttgttga cgatgcaaga taggcaaagt
     2161 gttcccgttt gacgtcattg catgccttca tccggtgaca cgttgcctac cctgccggtg
     2221 gctctcgtgc gggacaggat atgttttgta gcaccgccgt gggcgacgcg tccaaaacga
     2281 gggtgacgga caggaaatgt gttgtcatta ccgccggtgt tcctggcttt gacaacacgc
     2341 aggtcagggc gaagccccga caccccgaat ctcccctata ctgtgccaaa aaaaaggagg
     2401 tctctatggc atggcacagt gtgtcgcagg cacaggcatt gaccggaaaa agtcggcgga
     2461 cgctctaccg tgatatggcg gcaggccgcg tatcatggcg caataatgcc gatggcaggc
     2521 gggagttaga aactacggaa ttgctgcgcg tgtacggcga actgcagcct gatggcacgg
     2581 atgcgcggca cacgctgtca cagcccgttg gcacagaaga tcaggcggta ttactcgccg
     2641 aaatacgcgc attacggcag gaggtcgccg atttgaaagc ggcggtcttg cgtctggagc
     2701 accatcctac cccggcggag ccggcgatcg tcaaacggtg gtggcagcgc tggcgccgtt
     2761 gatccccact gccgcgccgc cggcttggcc aacgcttcac ggccgcgcaa taaattgccc
     2821 gcccgttcac cgtttctcac attggcagaa cggcaaaaac acgcgattcg gtcgcgtttc
     2881 tctctgaacc tggtctctgc gtgctgggtt gcataatcat tcatgccgcc aaacggcctg
     2941 tacgccattt tgcgggcttt ttttgcggag aagtgagggg gttttactgc tttggttgtt
     3001 caagcgcaca tagggcgtct gaggcggtgc gggaaacgga tgttatggta aattgtgaaa
     3061 ttagctgaga tttttttgtc aactttttgc tgtatgttta aacatgagtt ctacgctgac
     3121 agtactgttg ctaatttcat ctgccagact ggtaattccc ttgtaaatca atcgcgagag
     3181 atcagtaaaa aagctatgtg tgtgcttatg gaatagggta gaataagaaa ttctgatgat
     3241 cgtgaggttg tcagtgaaaa acgaggcagc tatcagatct tcggcctgag aaactaagga
     3301 ttctgatagc tgccggtgac tcggttcgtg aaaactgaat ctacctgatc aacaaacgcc
     3361 cgattagggc gtttgtcaag tggtgctgca ttatgtagta acttggtacc gacttgccag
     3421 gtatttttca cagtttttga tgcgcgaagg ctcatacgga caccgtcacc tgttatttat
     3481 tctctgtaaa caggtgctat aaatgcaaaa agtaaccgat ttgtatcctc ctgaaattgc
     3541 tagtcataat cttcataatc acttcgctgg caacgaagtg atgctggagt taatcaagaa
     3601 attaaataaa accagtttgt gtacttttgc agctctctgt gatggtaacg tggtaaccac
     3661 ttccggctat aacattatgg ccgatctgtg tgttaa
//
