LOCUS       NZ_OX291473             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1045 plasmid 4, complete sequence.
ACCESSION   NZ_OX291473
VERSION     NZ_OX291473.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201014
            Assembly: GCF_946404695.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:31:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,246
            CDSs (total)                      :: 5,115
            Genes (coding)                    :: 5,042
            CDSs (with protein)               :: 5,042
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 28 of 74
            Pseudo Genes (incomplete)         :: 45 of 74
            Pseudo Genes (internal stop)      :: 15 of 74
            Pseudo Genes (multiple problems)  :: 11 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291473.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1045"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="4"
     gene            complement(join(3005..3223,1..114))
                     /locus_tag="N4J60_RS26210"
     CDS             complement(join(3005..3223,1..114))
                     /locus_tag="N4J60_RS26210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(282..497)
                     /locus_tag="N4J60_RS26215"
                     /old_locus_tag="SAMEA13201014_05195"
     CDS             complement(282..497)
                     /locus_tag="N4J60_RS26215"
                     /old_locus_tag="SAMEA13201014_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(501..986)
                     /locus_tag="N4J60_RS26220"
                     /old_locus_tag="SAMEA13201014_05196"
     CDS             complement(501..986)
                     /locus_tag="N4J60_RS26220"
                     /old_locus_tag="SAMEA13201014_05196"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1021..1725)
                     /locus_tag="N4J60_RS26225"
                     /pseudo=""
     CDS             complement(<1021..1725)
                     /locus_tag="N4J60_RS26225"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1664..1987)
                     /locus_tag="N4J60_RS26230"
                     /old_locus_tag="SAMEA13201014_05197"
     CDS             complement(1664..1987)
                     /locus_tag="N4J60_RS26230"
                     /old_locus_tag="SAMEA13201014_05197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(2084..2275)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          2255..2738
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(185..1674)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tattgcagtt cctacagacg gccacaggcg tgtaaatcct tctgaatatt tcataaaggt
       61 ggtgcctatg acttcagcca caatagcccc tcccaggaaa atatatgtat tcataaaaat
      121 acctcatgtt gaaaaattta aatatcttta cataacaact aattaataga acccggctta
      181 tcatagcgaa ggaccatgat gctgccactg cgatcgttcc agctccagcg ctttctggtg
      241 ctgcaccgcc cgctcctgct gccggtgagt ttctatcgcg ttcagccttt cgacaaccgg
      301 cgcagctgct cgctcaaact ctgcacctgc ctgctcaaga ccgtgacgcg ctcgttcagc
      361 gccgcgttct cccgttgaat aagaccagac atcgtccgcc attccgcgaa ggcgttctcc
      421 cactcgtcca gccttttcga gtagtcctgc tgtagctgct ctaatgcgct cagcaactgt
      481 ttttccagct ccgtcatgtg ctatttcccc gccagtatca tccagctcga gtcctctccg
      541 aactgtcccg cttccgggtt caccctcacg cagcggcgtc tctgctcgcc gcaggtcgag
      601 agctgtacgc cgctgttcct ctctgacagc atggcctgcg tgctcttctg ctcccggatg
      661 gtcgtatagt tctcgagtat ctgctgcccc tgccaccaca gaatgcccgc gctcgacgct
      721 atcagcagcg cggagaccag aacgatggtc agccacgtct ggctgaccat gcgcagcatc
      781 cctttcgtgc gctggctcat ggctgaggac agcttccggt cgtggtcgag gatggcggcg
      841 ctgattctct tctcgctttc gctcagttcc gctctgacag acttctcgtg ctcgctgaat
      901 gcggctttca gcatctcgcc ggtagtctgc tgctgcgctt tcgatttctg ctctaagtcc
      961 ttcgccagcg ttaaaagact gttcatagat ggctcccttc agtcggatgt ttcgcccccc
     1021 gtccgggtcg gcaatgctga tgctgctttt tgtggtgcgc accacctcaa aacctgcgct
     1081 ttccagcgcc tcagtgacgt cctgacgcgt tttcagctcc ccggatgagg caagggcaag
     1141 caggccgctc gtaatcgcct gggcggcttc ctgcttcgct tccggcagcg cggaaggcga
     1201 gaccagcacc cgccggttct ccggcgcgtt cgggtcatgc agccccagcc tgccgttcac
     1261 tatggtctgc caggcatcga tgcgcggacg gtcggcgcgg tcgtaatacg gctgtagccg
     1321 cttgccggtc agaagctccg tgttcgggat caggaagttc agctccagcc gccccttgtc
     1381 ccggtgctca acccacagca cgctgtactg gtctttatcg agtccgggca tcagaacccg
     1441 ctcgaaactc gccatcagct tttcgcgctg gccgggcggt aaatcctgtt cggcaaaaga
     1501 cagaacgccg gaagtgtact ttttggcgta gggcgaggcg tcgataagct cccggacttc
     1561 atccggcttc ccctgcagaa cgctggcgcc gtcgcgctgg cgatctttac ccagcagata
     1621 atcgaccggc ccgccgccgc cgccgcgccc ccgaggatga aacttaacga tcatcatcag
     1681 cacccttttc cagtacggca tgccgcaacc gctcgagtcc ggcatcgatg gccatcagcg
     1741 cggcgacaat ctgcacgcgg tcgtgtccgc ttccaccacc ggcgttaacc tggcgggcaa
     1801 tctggttaag gttgttcccc atgccggcaa gctgacgaag cagcgccggc gagatcgacg
     1861 gaagtttgcc ggcgcgtgcg ggcttctcgt ccaggcacgt ctgccgcatc caggccgcga
     1921 gttgcttacc ctcgcagcgc tccagcagac gccggtgctc gtcctcagtc acccacatgg
     1981 tgagcatttt gctgcgtttg tctgccaatc cggcctcctg ataacgccgg gacggacggg
     2041 aaatcttttc ccggtcggca cggtgttgga caagccgcag acgcggcagt ggttttagcg
     2101 ggtttcgggg cgcagccctg aaccagtcac gtagcgctag cggagtgtat actggctaaa
     2161 catgttatga cggagtggta atttatgaaa gtgcttcatg tgacagggga aaaatgcggc
     2221 tgccgggcgt aagtgcaaaa tgcaggtggt gatgaaatga cgcctcctcg ctcactcggt
     2281 cgctacgctc ctgccgtgag actgcggcgg gcgttaccag ctcacagatt acgggataag
     2341 caaatgccgc tcgaagcagg aaaggccaag aaaaggatgc ggagttgccg tttttccata
     2401 ggctccgccc ccctgacgag tatcacgaaa atgacgctca aatcagcggt ggcgaaaccc
     2461 gatgcggctt aaagatacca ggcgtttccc cctggtggct ccctcgtgct cccccgcatt
     2521 cctgcctttc ggtttaccgg tgtcattccg ctgttatggc cgcggtttct cattccacgc
     2581 ctgaaactcg gttccgggta ggcagttcgc tccaggatgg actgtatgca cgaacccccc
     2641 gttcagtccg actaccacgc ccgttccggt aactatcaac ttgagtccaa cccggaaaga
     2701 cacgacaaat cgccagtggc ggtagccatt ggtaactggg ttcacggagc agagattgta
     2761 gagaatgcct acagagttct tgaagtgaaa gcctgagtgc ggctacactg aaaggacagt
     2821 ttaggtatct gcgctccgtg aaagccagtt accatcggaa caaagagttg gtagctctga
     2881 attccggcaa acgaaccacc gttggtagcg gtggtttttt tgtttacagg gaaaaagatt
     2941 acgcgcagaa agaaaggatc tcaaggaaat ccttttgctt tggccaatat gcttcggtaa
     3001 aaagttaatg cgcagaagat tttgaaaaaa tattaataac caaaactcca acgcaaataa
     3061 ggaacattcc tgcaattgcg ggccaatcaa gtttttgacc gctaaccaac caaccagcta
     3121 ggcttattag tacaattccc gcaccagacc aaattgcgta agcaataccg gtaggtatat
     3181 tttccaatgt ttgggaaagc agataaaagg cagcgcaata act
//
