LOCUS       NZ_OX291472             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens strain SJC1045 plasmid 3, complete sequence.
ACCESSION   NZ_OX291472
VERSION     NZ_OX291472.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13201014
            Assembly: GCF_946404695.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:31:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,246
            CDSs (total)                      :: 5,115
            Genes (coding)                    :: 5,042
            CDSs (with protein)               :: 5,042
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 28 of 74
            Pseudo Genes (incomplete)         :: 45 of 74
            Pseudo Genes (internal stop)      :: 15 of 74
            Pseudo Genes (multiple problems)  :: 11 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX291472.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="SJC1045"
                     /serovar="NA"
                     /isolation_source="Bloodstream"
                     /db_xref="taxon:615"
                     /plasmid="3"
     gene            complement(join(3198..3696,1..20))
                     /locus_tag="N4J60_RS26185"
     CDS             complement(join(3198..3696,1..20))
                     /locus_tag="N4J60_RS26185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(761..1117)
                     /locus_tag="N4J60_RS26190"
                     /old_locus_tag="SAMEA13201014_05193"
     CDS             complement(761..1117)
                     /locus_tag="N4J60_RS26190"
                     /old_locus_tag="SAMEA13201014_05193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            1793..1924
                     /locus_tag="N4J60_RS26195"
     CDS             1793..1924
                     /locus_tag="N4J60_RS26195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     gene            2294..2482
                     /locus_tag="N4J60_RS26200"
     CDS             2294..2482
                     /locus_tag="N4J60_RS26200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            2571..2987
                     /locus_tag="N4J60_RS26205"
     CDS             2571..2987
                     /locus_tag="N4J60_RS26205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     Typing          1557..1901
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 aaatcggtta ctttttgcat ttatagcacc tgtttacaga gaataaataa caggtgacgg
       61 tgtccgtatg agccttcgcg catcaaaaac tgtgaaaaat acctggcaag tcggtaccaa
      121 gttactacat aatgcagcac cacttgacaa acgccctaat cgggcgtttg ttgatcaggt
      181 agattcagtt ttcacgaacc gagtcaccgg cagctatcag aatccttagt ttctcaggcc
      241 gaagatctga tagctgcctc gtttttcact gacaacctca cgatcatcag aatttcttat
      301 tctaccctat tccataagca cacacatagc ttttttactg atctctcgcg attgatttac
      361 aagggaatta ccagtctggc agatgaaatt agcaacagta ctgtcagcgt agaactcatg
      421 tttaaacata cagcaaaaag ttgacaaaaa aatctcagct aatttcacaa tttaccataa
      481 catccgtttc ccgcaccgcc tcagacgccc tatgtgcgct tgaacaacca aagcagtaaa
      541 accccctcac ttctccgcaa aaaaagcccg caaaatggcg tacaggccgt ttggcggcat
      601 gaatgattat gcaacccagc acgcagagac caggttcaga gagaaacgcg accgaatcgc
      661 gtgtttttgc cgttctgcca atgtgagaaa cggtgaacgg gcgggcaatt tattgcgcgg
      721 ccgtgaagcg ttggccaagc cggcggcgcg gcagtgggga tcaacggcgc cagcgctgcc
      781 accaccgttt gacgatcgcc ggctccgccg gggtaggatg gtgctccaga cgcaagaccg
      841 ccgctttcaa atcggcgacc tcctgccgta atgcgcgtat ttcggcgagt aataccgcct
      901 gatcttctgt gccaacgggc tgtgacagcg tgtgccgcgc atccgtgcca tcaggctgca
      961 gttcgccgta cacgcgcagc aattccgtag tttctaactc ccgcctgcca tcggcattat
     1021 tgcgccatga tacgcggcct gccgccatat cacggtagag cgtccgccga ctttttccgg
     1081 tcaatgcctg tgcctgcgac acactgtgcc atgccataga gacctccttt tttttggcac
     1141 agtatagggg agattcgggg tgtcggggct tcgccctgac ctgcgtgttg tcaaagccag
     1201 gaacaccggc ggtaatgaca acacatttcc tgtccgtcac cctcgttttg gacgcgtcgc
     1261 ccacggcggt gctacaaaac atatcctgtc ccgcacgaga gccaccggca gggtaggcaa
     1321 cgtgtcaccg gatgaaggca tgcaatgacg tcaaacggga acactttgcc tatcttgcat
     1381 cgtcaacaaa agccccgcga tgaccgtgcg acatatcagt caaatgcact tccgcttcct
     1441 cgcgttgaca gactacgcta gtcaacactg cggcgagcgg tggggataaa aagggaagga
     1501 tgacggagta agagcatgca gaaagacggg aaaaggccac agcccagcgg gctgtttttc
     1561 cataggctcc gcccccctga caagcatcac aatatctgac gctcaaatca gtggtggcga
     1621 aacccgacag gactataaag ataccaggcg tttccccctg atggctccct cgtgcgctct
     1681 cctgttcctg cctttcggtt taccgatgtc attccgctgt tatggccgcg tttatctcat
     1741 tccacgcctg acactcggtt ccgggaaggc agttcgctcc aagctggact gtatgcacga
     1801 accccccgtt cagtccgacc actgcacctt atccggtaac tatcgacttg agtccaaccc
     1861 ggaaagacac gacaaagcgc cactggcagc agccgttggt agaggtgtac aagagattaa
     1921 ctgaatgaga gttcttgaag tggcaaccca actgcggcta cactgaaagg acagaatttg
     1981 gtttcagcgg tcttgtacac cctgttacca cggttcagaa gttccccaac ttactgaacc
     2041 ctcgaaaaaa ccgcctcccc aggcggtttt ttcgtttcaa aggaagatta ccgacagcac
     2101 agatagatct caagaaaatc attcaatcaa gcagaaacaa agcaactttc cttaccgctt
     2161 gaatacacac gattacacac agagattgac accgtgtgta atcgtgtgta ttattgtcga
     2221 aagtttccgc ttttgatgga gacgaaagga acccagctcc gcaaaagcag agcacaacca
     2281 taaggtacgt agcatgagtt cttctgaaga cataatccga agaattcagc tcgatggatg
     2341 ggaaaaagtg gcccaaaaag gtagtcatgt gcagtttaaa catcctacta aaaagggtcg
     2401 cgtaaccatt cctcacccga acaaagacct gcctaaggga actgtaaaaa gtatccttaa
     2461 gcaggccggg atagctgaat gattcctcac cgggaaggct ttgccttccc ggtagagttc
     2521 agaatgactt actacgttta atgagtaatg agagagatta ggagttaacc atgtacattc
     2581 cggtagtgat ccataaggat gccgatacgg attatggcgt aactgttcct gatattcctg
     2641 gatgttactc agcaggtgta accgtagatg aagcattgca aaatgctaaa gaggcgattc
     2701 tttttcatat agaaggatta attgaggatg gcgtatatca tgaatttaaa ttcagcgata
     2761 tagaagcctt aaaaacttat gatgaatatc atgatggtat gttttcgttg gttgacgtag
     2821 atcttagcgc attaacagat gaagcgacaa gatttaatgt tagctggcca aaatacgtat
     2881 taaccatttt agatggttca ttaaaagaaa ctcatgagac tcgttcaggt tacttagcaa
     2941 aattagtgct tcaagacttg cgtagaaata gatcattcca ggattaatgt gaatcaagga
     3001 tagaactcat aggaggaaca gacatggcaa aagacagtaa aggtagaaaa ttcaatagga
     3061 ttgcgtcata ccaaaagact ttatccagtg gtgaagtaat aactgttaga gctcatgtga
     3121 gaagcaacag aaaagactcc gctggtagta agtaagaaaa aaggctagag aaatctagcc
     3181 tttttttatt cattcattca acttgctttc ttttcatcgg acggcggtga atcattagca
     3241 ccagaaacat tacgtaaaag ttccaaaaca cctgactcac caaactcttt gtatagccta
     3301 atcatttcct tctgagcatt ggagcgcttc tggctattca ggttacgttc gcactctttc
     3361 atcatctttt caggttcaga cttcagtctt gcaagatcgc tctcgtcaag atagaaagca
     3421 acctgtttta ctgcaccacc aacatcagcc ttagtcgata tcgttctagc ggtgactgga
     3481 agatattttt gtttaagaga atgagccaca gctgacgcac ggttaacaca cagatcggcc
     3541 ataatgttat agccggaagt ggttaccacg ttaccatcac agagagctgc aaaagtacac
     3601 aaactggttt tatttaattt cttgattaac tccagcatca cttcgttgcc agcgaagtga
     3661 ttatgaagat tatgactagc aatttcagga ggatac
//
