LOCUS       NZ_OX030737             1783 bp    DNA     circular CON 16-JUL-2023
DEFINITION  Escherichia coli isolate 68 plasmid P9, complete sequence.
ACCESSION   NZ_OX030737
VERSION     NZ_OX030737.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065790
            Assembly: GCF_905330955.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/16/2023 03:42:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,517
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,222
            CDSs (with protein)               :: 5,222
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 70 of 177
            Pseudo Genes (incomplete)         :: 116 of 177
            Pseudo Genes (internal stop)      :: 35 of 177
            Pseudo Genes (multiple problems)  :: 40 of 177
            Pseudo Genes (short protein)      :: 4 of 177
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX030737.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="68"
                     /isolation_source="Hospital de Guadalajara (Guadalajara)"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="P9"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            join(1589..1783,1..795)
                     /locus_tag="LQ200_RS27535"
                     /old_locus_tag="AI2959V1_5306"
     CDS             join(1589..1783,1..795)
                     /locus_tag="LQ200_RS27535"
                     /old_locus_tag="AI2959V1_5306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001529700.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEILNRMNAAFQRLKDRKEFRPVQGWIRTTEVTRSS
                     DGSAHPHFHTLMMVPPSMLSGDGYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     Typing          complement(522..713)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.409"
                     /coverage="100.0"
                     /evalue="6.18e-88"
ORIGIN
        1 acgcgtctga ggctgcgtga ggcgcatttc tgccgtgtcc ggcactgtcc tgtctgccag
       61 tggaggcgct ccctgatgtg gcaagcccgt ttctaccagt ccctgccgcg tatcgtggcg
      121 gattaccctg atgcccgctg gatgttcctg accctgaccg tgcgcaactg tgcgatcggg
      181 gagctgggcg agatactgaa ccggatgaat gcagctttcc agcgactgaa ggatcgcaag
      241 gagttccggc ctgtgcaggg ctggatacgt accacggaag tcacccgcag cagtgacggc
      301 agcgcacatc cccacttcca caccctgatg atggtgccgc cctcaatgct atctggtgac
      361 ggttacgtaa aacatgctcg ctgggttgaa ctctggcggg agtgcctgcg ggtcagttac
      421 gacccgaatg ttgatgtccg ggcagtaaaa ccccggaagc cgaaggacgg cgaatcgctg
      481 gcctgcgcga ccgccgaact ggtgcgcggt gcggtggccg aaaccctgaa gtattccacg
      541 aagccggctg acatggtggc cgatcctgaa tggttcctcg aactgacccg ccagacgcac
      601 aagcgccgct ttgtggcgac tggcggcgca ctcaaagacg tactgaagct cgatcaggaa
      661 accgacgcag acatggtgat cggggatgat atttccgagg gcgacgatga cggttcccgc
      721 atcgcgttcg agtggaaaac tgaggtcaga aagtaccgtc gctcaccgac gaaagataaa
      781 accgaatcag agtaacgggg tgtcggggct gcgccctgac catgaggact ttgggcatcc
      841 gtcaccttgg tggcggtgta ccaaagtcac atcttgtccg attggtttta ctccgatgca
      901 ggatagggct aacgccgcaa agtgctagca ctcgattgcc tagttcggaa tccgaactta
      961 gggttttgcg atccgtaata cggatttttt ttgacgggac aagatgtgtt tttggagtac
     1021 cgccatcacg atgcgggtac caaaaacgat ccgtcagggc tgcgccccga caccctgcca
     1081 acacctcacg ccgccagatt gaaatctgcc agcgttcgcc gttcctgaaa tcgtcaaacg
     1141 ctaaatcgtg gggtcccgct ggcttgccag tgggttccga tttagtgatt gacgaccgcg
     1201 cccgtaaaac actgccgaca ggtggttgtg atcacgcagt gagcgcaacc acctggtaag
     1261 cggttttggg tttttttggg ggtgatttaa cgcggttttc gggtggcaaa tctcgcgcgc
     1321 gatccttgta tttatactta agggataact ctgggattca aattggcctc cagcccttgt
     1381 cccgcaaggc ttgagggcac atttgctccg aaatgggttt agaagtattc tgtcggaagt
     1441 ggtcgcgtta aaagcgaccc ccgcaacgac gggcatcgtt cgggggcgtg accacctgta
     1501 gagattcgaa ttggtgatac ggctaacaca ggtgatatgg caatgataac acgtcagatg
     1561 agccatcgcc cacaatcggg tggtgtgcat gaaaaatcct gaactccaga acctcacgga
     1621 ctattccccc tcagatgcgc cctgggacgc tcacagaagc gtttctgacg acgtgggagg
     1681 gatttacctg cttgcggccg aatatgagcg ctacggggcg cgtatggccc tctgtggcgg
     1741 tttattgcgt ttcgggtggt ctaccctcaa ggaaaccgga gaa
//
