LOCUS       NZ_OW970559             2674 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P6, complete sequence.
ACCESSION   NZ_OW970559
VERSION     NZ_OW970559.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082328
            Assembly: GCF_903993185.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993185.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 04:03:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,563
            CDSs (total)                      :: 5,441
            Genes (coding)                    :: 5,309
            CDSs (with protein)               :: 5,309
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 49 of 132
            Pseudo Genes (incomplete)         :: 83 of 132
            Pseudo Genes (internal stop)      :: 16 of 132
            Pseudo Genes (multiple problems)  :: 14 of 132
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970559.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            join(1466..2674,1..75)
                     /locus_tag="LQV20_RS27685"
     CDS             join(1466..2674,1..75)
                     /locus_tag="LQV20_RS27685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_163495232.1"
                     /translation="MKSQFMHVELYSREEPAKKTINKSKNLNHQSDVRTTTVSGVLSEM
                     KREEGFTSHLESIHAPDVLYGSISDLERSIERYEAEFKTTDKNGKEKKLRKDACILLAG
                     VVSLDRADEEIWEEYKKSSIEYLKNKYGENLKCVVEHTDETNPHFHFYVVGNQKQDLNL
                     LHDGKLAVSKLAKEDKKKLHQTVYTEAMIKFQDDFYTKVSNKFGLSRTGEEPRERYKSR
                     PDYLRFKKRQETALNILSDIEEFEADIKEKARKTGYSKGAKQFQNKTWVIKVGEAIKLL
                     GKEHKAELDQKEKDLEKIKKEKTEIETELNLKKEELSNAYSQRNEASRKNSVYIDKVNA
                     LKKENKLLLPYKDQFDLKLQQEKEPLQAEVKELTSENTNLKNENSELKKENLDFKEFIL
                     GVKNYYGSKFQEWYEEVFNPKTKTKPKF"
                     /name="plasmid recombination protein"
     gene            623..1222
                     /locus_tag="LQV20_RS27690"
                     /old_locus_tag="AI2768V1_5255"
     CDS             623..1222
                     /locus_tag="LQV20_RS27690"
                     /old_locus_tag="AI2768V1_5255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019704520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_094327210.1"
                     /translation="MAKAKVLIDDTEEAIIKNALDVDDMNEVNINVTRKKKTGFLGTYS
                     IVFHDSVKTLSKMNLKPNAYKIVMYLFGIIEMGNILVNFSQKKIADDLGLQPSNVSRAF
                     KELFEKKVLIKDSEDGHVYLNSNLCTMGVPKNFDQKRMKSLQKSNIETEDFKNQINLFT
                     PTNTTKIKTNDKKVIKKKEKENVLEFPMQNDWVDIE"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 tactatggat ctaaatttca ggaatggtac gaggaagtat tcaacccaaa aacaaaaaca
       61 aaacccaaat tttaattgaa tattttcata tttgccgcct atgtggtgta tgagacacca
      121 ccagaagcgg cctgacagcg tttagctgtc atagctggga tttatcccaa aaaaagtagt
      181 ttgcacgcag ttagtaacct ttaaatatca ataacttata aagaaaaaat acttaaaccg
      241 tgaaccgtga aaactgcaga acctctggtt ctgtggtttg agcggttgtc caacgacccg
      301 aaggggaggc ggtaaggcag ttgaagttac ggtttcttct ttcttatttt cttacttctt
      361 aagcaccctt taaagcctta tatatcaaca ctttaccaaa aaaaaaatta tgaaaatcat
      421 aattttcgat tatgaaaatc ataatgcaaa attatgaaaa tcataatcag acttatgaaa
      481 atcataattt tgcatacagg tgcattgata tgatttgatg ttgaaacgat aactttctta
      541 tcgttttgat attgacattg catttagatc ggttataaat gcaacataga ttattatttt
      601 tactacaaaa aggaatataa aaatggcaaa agcaaaagtt ttaatagacg atacagaaga
      661 agcaataata aaaaatgcat tagatgttga tgatatgaat gaagtaaaca ttaacgtcac
      721 gagaaagaag aaaactgggt ttttaggaac ttattcaata gtttttcatg actctgtgaa
      781 aacactatct aaaatgaact taaagcctaa tgcatataag attgtaatgt acttatttgg
      841 cataatagag atgggtaata ttttagttaa cttctcacag aaaaagattg ctgatgattt
      901 aggtttgcag ccttcaaacg tatcaagagc tttcaaagaa ctttttgaaa aaaaagtttt
      961 aatcaaagat agcgaagacg gacacgttta cttgaattca aatctatgca ctatgggtgt
     1021 tccgaaaaat tttgatcaaa agagaatgaa aagtttacaa aaatcaaata ttgaaactga
     1081 agattttaaa aatcagatca atttatttac tcctacaaat acaacaaaaa taaaaaccaa
     1141 tgataagaaa gttatcaaga aaaaggaaaa agaaaacgtt ttagagtttc caatgcaaaa
     1201 tgattgggtt gatattgaat agtaaaacta atactaccgc acttcgtttg ctgaatccct
     1261 aaacctcgca aatataaaat ttgcaaggtt tagggatttg cttttttgtt ttgaagttga
     1321 ctttaacccc gtagggccgc atctatggag cagcatatga aatatgctag cgtaatagat
     1381 atagtcggtt cctatagcta ttgacagaaa aacaataact gttaattaca tatataaggg
     1441 aaattaaaat ataggagaat tgaaaatgaa atcacaattt atgcatgtag aactctacag
     1501 cagagaagaa ccagcaaaaa agacaataaa taaaagtaaa aatctaaatc atcaatctga
     1561 tgttagaaca acaaccgttt ccggtgtgtt gtcagaaatg aaaagggaag aaggttttac
     1621 atcacattta gagagcatac atgcacctga tgtgctgtat ggctctataa gcgatctaga
     1681 acgctctata gagcgttacg aggctgaatt taagactact gataaaaacg gcaaagagaa
     1741 gaagctacgc aaagatgcat gcatcttgct tgctggtgtg gtttctctag atcgagcaga
     1801 tgaagaaatt tgggaagaat acaagaaatc atctattgaa tatttgaaaa ataaatatgg
     1861 tgaaaattta aaatgtgttg ttgagcatac agacgaaaca aacccacatt ttcactttta
     1921 tgtggtcggt aatcaaaaac aagatttaaa tttgcttcat gatggaaagc tcgcagtatc
     1981 taaattagca aaagaagata agaaaaaatt acatcaaaca gtctacacag aagctatgat
     2041 caaatttcaa gatgattttt atacaaaggt atctaataaa tttggattga gcagaacggg
     2101 cgaggagccg cgagaacgct ataaatcccg ccctgattac ttgagattta aaaaaagaca
     2161 agaaacagca ttaaatatat tgtctgatat agaagaattt gaagctgata ttaaagaaaa
     2221 agcaaggaaa actggatata gtaaaggtgc aaaacaattt caaaataaaa catgggtaat
     2281 taaagttggt gaggcaatta aattacttgg aaaagagcat aaagcagaat tagatcaaaa
     2341 agaaaaagac ttagaaaaaa taaaaaaaga aaaaacagaa attgaaactg agcttaattt
     2401 gaaaaaagaa gaattatcta atgcatatag tcaaagaaat gaagcatcga gaaaaaacag
     2461 cgtttatatt gataaagtaa acgctctaaa aaaagaaaat aaattattac ttccatacaa
     2521 agatcaattt gatttgaaat tacagcagga aaaagagcca ttacaagcag aagtcaaaga
     2581 gttgacttct gaaaatacca atttgaaaaa tgagaattca gaactgaaaa aagaaaattt
     2641 agatttcaaa gaatttattt tgggtgttaa aaat
//
