LOCUS       NZ_OW970536             4167 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P6, complete sequence.
ACCESSION   NZ_OW970536
VERSION     NZ_OW970536.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082331
            Assembly: GCF_903993215.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993215.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 11:17:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,538
            CDSs (total)                      :: 5,416
            Genes (coding)                    :: 5,287
            CDSs (with protein)               :: 5,287
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 49 of 129
            Pseudo Genes (incomplete)         :: 79 of 129
            Pseudo Genes (internal stop)      :: 17 of 129
            Pseudo Genes (multiple problems)  :: 14 of 129
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970536.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            225..467
                     /locus_tag="LQV07_RS27540"
     CDS             225..467
                     /locus_tag="LQV07_RS27540"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(813..1214)
                     /locus_tag="LQV07_RS27545"
                     /old_locus_tag="AI3065V1_5232"
     CDS             complement(813..1214)
                     /locus_tag="LQV07_RS27545"
                     /old_locus_tag="AI3065V1_5232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1214..1405)
                     /locus_tag="LQV07_RS27550"
                     /old_locus_tag="AI3065V1_5233"
     CDS             complement(1214..1405)
                     /locus_tag="LQV07_RS27550"
                     /old_locus_tag="AI3065V1_5233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1821..1934
                     /locus_tag="LQV07_RS27555"
                     /pseudo=""
     CDS             1821..1934
                     /locus_tag="LQV07_RS27555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2279..3394
                     /locus_tag="LQV07_RS27560"
                     /old_locus_tag="AI3065V1_5234"
     CDS             2279..3394
                     /locus_tag="LQV07_RS27560"
                     /old_locus_tag="AI3065V1_5234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            3394..4026
                     /locus_tag="LQV07_RS27565"
                     /old_locus_tag="AI3065V1_5235"
     CDS             3394..4026
                     /locus_tag="LQV07_RS27565"
                     /old_locus_tag="AI3065V1_5235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     Typing          1527..1934
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 attgtgcaga tctaatgtaa aagacccagc acaagatgct cccttaagtt atattctctc
       61 tattcactta aaacaattta acataaaatc ataattgtac gcaccgctaa aacggactca
      121 ggacgtttct gacgggaaac cggtaaaaca ggcaacaaac cacccgaaaa cccgccagaa
      181 acgcgcaggc tctgttttta cggcatgcat gagtatgcgc gcaagtgcat agcgcggaaa
      241 ttcacaccat tcagccaggg gaagtcctgt ttccggcgtt cttctcctcc gaaaacggtg
      301 aacggggacg caatttattg cgtggccgtg aagcgttgcc ggcgcagccg gaaaaccggt
      361 tttcagcacc ttcaggaatc gggttcgtcg acggccggca atcacgttat ggcaagtcgc
      421 cggacgactc accacacgat tcaccggcga ttcgaatcgt gaattgaatc aagagtcacc
      481 atgagcaaaa aacacccaaa gtgatgaatt gaatcaagag tcgattcatc ataacaatat
      541 gataataaag cgtgattcac atatgaatcg tgggcaattc gtcagcgatt cgccatagag
      601 tcgtccacga cttggatctg cactttgtaa cacatcaccg cacatttatt tttcattaac
      661 ccattgttgt aaataaggaa tctgcaaaat tttaattttg cgtggggtgt gggtattttt
      721 agtggtgagg agcgttcaga gatctgacga tttttgggaa ggttcaggaa ctccctggga
      781 tggccggaga ggaaaactga agcatgacgg ggtcaggatt ttttccagaa tttccaccat
      841 ggcgccgggg attcagttaa ttttgcctgg tgattttcaa gaaggagcat ggcctgtttc
      901 aggctgtcaa tgtgcgaatc cttggacaaa agtaaggtgt tcaggtgttc aatctcctgt
      961 ttcagatgac ggatcacctg ttcactctgg tcagcagagg ctgtatcacg ctgtccagag
     1021 acctgtccag aatggtgttc acccttcggt tgctcaaagg ggccaaagac acgtaaaagc
     1081 tctgaagtat ctaccatttt tgcattgcgc tcaccgctac aggtggacag gtcacctgct
     1141 ttaattaacc tgtgcagtgt tgttctactc ttacccgtca gtcgggcagc ctcactaata
     1201 gacactctgg ccatcagtta ccatcctgta atgcatccag tctcgaggac agtgtacgga
     1261 aaagatgctc cgcatcatcg tggagtttct cacaaaggtc ggcctcgaca tcgagatcaa
     1321 gctcgttaag cttctccagc aggagcagag actgattctg gatgaattta gccatgttca
     1381 gcgctgtttt ctgttgtttc gtcataagag gcctcagagc gtcagtggtc agtgtaggga
     1441 tctcctcttt tccgcttcct cgctcactca gtcgctacgc tcctgccgtt cggctgcggc
     1501 gagcggcagg agcatgcgta gaaacgctcg agaaaaccga gtaatcgcat ggaggaaaga
     1561 aggaaaggcc gcacagcggc cgtttttcca taggctccgc ccccctgacg agcatcacgg
     1621 aatctgacgc tcaaatcagt ggtggcgaaa cccgacagga ctataaagat accaggcgtt
     1681 tccccctgat ggctccctcg tgcgctctcc tgttcctgcc tttcggttta ccggtgtcat
     1741 tccgctgtta tggccgcgtt tgtctcattc cacgcctgac actcagttcc gggtaggcag
     1801 ttcgctccaa gctggactgt atgcacgaac cccccgttca gtccgactgc tgcgcctaat
     1861 ccggtaacta tcgtcttgag tccaacccgg aaagacacga caaagcgcca ctggcagcag
     1921 ccactggtaa ctgatttagg gagttagtct tgaagttata cgccagttaa agctaaacta
     1981 aacgaacagt tttggtgact gcgctccctt taagccagtt acctcggttc atagagcgcc
     2041 aactctactg aacctttcga aaaaaccgcc cgccaaggcg gtttttttcg ttcacagccg
     2101 gaagcttacg gctgctgcca gataatctca agaagaaagt aaaaaaaatc gattaaaaca
     2161 caagcaatca aagttaatct ttgacataaa gtctagctaa tcacaatgaa agctgtacat
     2221 tttattaagg tactaacaaa tcgtatggca tataacaaaa acacgaacag aggctatcat
     2281 gataaaggaa ataagtttaa agaacttcaa atgcttcaat gagctatatc taaagcaatt
     2341 aaagacttta aatatcatag ctgggaaaaa caactacggg aaaacatcta tactggatgc
     2401 tattttttgt ttttatgatg taaaaaaccc ggctgttttg ttaaacattc aagcattcag
     2461 aaaagaaatg gcagaaataa acaaaaacaa gccattttgg gttagttact ttcatgatat
     2521 ggacacatca caaaagatgt ccatagtcat tcgagatgaa cgctctgaag taacacaaac
     2581 atatgaaaca gaaacaaatc agagattaga atcaagtttg tctctaaacg ttgacaccgt
     2641 actatctaac caaaacatac ctcgtcaaac tatcggttct caggccacag taaactcttt
     2701 aaaaataaat gtgaccgaga cacccaatgc gaaaaacagg gtttccaata agcttttctc
     2761 tatgcaattg aaagaagatg gcgtagaaat aaaatccgaa ataaaaaacg aaagggatgg
     2821 gattaattat aaatttaaga cagcaacaat aataacaaca tccagaaaga taaacaaaga
     2881 ggcaacaatt acaaatgtat ctagcctact aacacaaaaa aggaaaaaag acatactaga
     2941 aaacttaaaa aaaatagatg acagaattgt agatatagca atatctgcga taggtaacaa
     3001 taaggaaata tatttagaca ttggatttag tgagctaaat gaaatatcaa tgcttggcga
     3061 gggtatcagt cgagcattat cttttatcag ctcagtgctg gtacaggaaa actcaattat
     3121 tcttattgat gaaatcgaga acggaataca ttactcagta attaaagaca taataaaatc
     3181 attaatttca tctgcaaaac aaaacaacaa tcaaatattt gcaacaactc atagtcaaga
     3241 tgtgatacga gcaataaacg aaatagatag caaaaatgaa gatatcgctt atattagact
     3301 aggaagagaa aagaactccc taaaaccaac agccgtacaa ttcaatatgg atgatttctc
     3361 ctactcagtt gagaacgact gggaggtaag ataatgaaag acataaataa tagcaaaaag
     3421 atcattttcg ttgagggtga tgatgatttt cattttctat gcaacctact tgaaatacaa
     3481 ggcattaccg atgtttttgt cgaaaaaata aatggaaaat caaaattaaa acaagcactt
     3541 agagcattca aaaacattga ttctttcgat gaaaaagaaa gtatttttat tatattagat
     3601 gctgacacat cattttctga cacagaaaga tcaataattg ccacattgcg agaactacaa
     3661 atctcctccc ccagctcgca taacgagata gctatgaatg gcaatacaaa aatttctttc
     3721 tttataatgc caggaaaaga caagcaaggt gccattgaag atctgataat tgaacacgca
     3781 agcactcgag cgttatatga atacataata gaatttttcg aaaaaattaa aaataataaa
     3841 gatgacatct cagcgagtga caaagagtac acttatccaa caaacgaaaa aaaagctaag
     3901 gtacaagtct atcttagctg caatagagaa tccgactcaa gaataggaat atccatgaaa
     3961 aatggaataa taaacacagc agacaattgc tttgatgaaa taaaagattt tatttcaaaa
     4021 atataaatcc aaatcaagcc agcccttcac gggctggctt atcaccaggg tgttattaaa
     4081 cgccggataa cgtatagaaa gcatcataca ctttagttat cagcaatctc aaacgtccta
     4141 aagacatcac cagatgccaa aacaatg
//
