LOCUS       NZ_OW970484             4167 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P6, complete sequence.
ACCESSION   NZ_OW970484
VERSION     NZ_OW970484.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082323
            Assembly: GCF_903993085.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993085.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 11:19:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,525
            CDSs (total)                      :: 5,403
            Genes (coding)                    :: 5,268
            CDSs (with protein)               :: 5,268
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 50 of 135
            Pseudo Genes (incomplete)         :: 83 of 135
            Pseudo Genes (internal stop)      :: 18 of 135
            Pseudo Genes (multiple problems)  :: 14 of 135
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970484.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            complement(join(3591..4167,1..56))
                     /locus_tag="LQV36_RS27470"
     CDS             complement(join(3591..4167,1..56))
                     /locus_tag="LQV36_RS27470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(56..1171)
                     /locus_tag="LQV36_RS27475"
                     /old_locus_tag="AI2764V1_5222"
     CDS             complement(56..1171)
                     /locus_tag="LQV36_RS27475"
                     /old_locus_tag="AI2764V1_5222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(1516..1629)
                     /locus_tag="LQV36_RS27480"
                     /pseudo=""
     CDS             complement(1516..1629)
                     /locus_tag="LQV36_RS27480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2045..2236
                     /locus_tag="LQV36_RS27485"
                     /old_locus_tag="AI2764V1_5223"
     CDS             2045..2236
                     /locus_tag="LQV36_RS27485"
                     /old_locus_tag="AI2764V1_5223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2236..2637
                     /locus_tag="LQV36_RS27490"
                     /old_locus_tag="AI2764V1_5224"
     CDS             2236..2637
                     /locus_tag="LQV36_RS27490"
                     /old_locus_tag="AI2764V1_5224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2983..3225)
                     /locus_tag="LQV36_RS27495"
     CDS             complement(2983..3225)
                     /locus_tag="LQV36_RS27495"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     Typing          complement(1517..1924)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 aaatcatcat caccctcaac gaaaatgatc tttttgctat tatttatgtc tttcattatc
       61 ttacctccca gtcgttctca actgagtagg agaaatcatc catattgaat tgtacggctg
      121 ttggttttag ggagttcttt tctcttccta gtctaatata agcgatatct tcatttttgc
      181 tatctatttc gtttattgct cgtatcacat cttgactatg agttgttgca aatatttgat
      241 tgttgttttg ttttgcagat gaaattaatg attttattat gtctttaatt actgagtaat
      301 gtattccgtt ctcgatttca tcaataagaa taattgagtt ttcctgtacc agcactgagc
      361 tgataaaaga taatgctcga ctgataccct cgccaagcat tgatatttca tttagctcac
      421 taaatccaat gtctaaatat atttccttat tgttacctat cgcagatatt gctatatcta
      481 caattctgtc atctattttt tttaagtttt ctagtatgtc ttttttcctt ttttgtgtta
      541 gtaggctaga tacatttgta attgttgcct ctttgtttat ctttctggat gttgttatta
      601 ttgttgctgt cttaaattta taattaatcc catccctttc gttttttatt tcggatttta
      661 tttctacgcc atcttctttc aattgcatag agaaaagctt attggaaacc ctgtttttcg
      721 cattgggtgt ctcggtcaca tttattttta aagagtttac tgtggcctga gaaccgatag
      781 tttgacgagg tatgttttgg ttagatagta cggtgtcaac gtttagagac aaacttgatt
      841 ctaatctctg atttgtttct gtttcatatg tttgtgttac ttcagagcgt tcatctcgaa
      901 tgactatgga catcttttgt gatgtgtcca tatcatgaaa gtaactaacc caaaatggct
      961 tgtttttgtt tatttctgcc atttcttttc tgaatgcttg aatgtttaac aaaacagccg
     1021 ggttttttac atcataaaaa caaaaaatag catccagtat agatgttttc ccgtagttgt
     1081 ttttcccagc tatgatattt aaagtcttta attgctttag atatagctca ttgaagcatt
     1141 tgaagttctt taaacttatt tcctttatca tgatagcctc tgttcgtgtt tttgttatat
     1201 gccatacgat ttgttagtac cttaataaaa tgtacagctt tcattgtgat tagctagact
     1261 ttatgtcaaa gattaacttt gattgcttgt gttttaatcg atttttttta ctttcttctt
     1321 gagattatct ggcagcagcc gtaagcttcc ggctgtgaac gaaaaaaacc gccttggcgg
     1381 gcggtttttt cgaaaggttc agtagagttg gcgctctatg aaccgaggta actggcttaa
     1441 agggagcgca gtcaccaaaa ctgttcgttt agtttagctt taactggcgt ataacttcaa
     1501 gactaactcc ctaaatcagt taccagtggc tgctgccagt ggcgctttgt cgtgtctttc
     1561 cgggttggac tcaagacgat agttaccgga ttaggcgcag cagtcggact gaacgggggg
     1621 ttcgtgcata cagtccagct tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg
     1681 aatgagacaa acgcggccat aacagcggaa tgacaccggt aaaccgaaag gcaggaacag
     1741 gagagcgcac gagggagcca tcagggggaa acgcctggta tctttatagt cctgtcgggt
     1801 ttcgccacca ctgatttgag cgtcagattc cgtgatgctc gtcagggggg cggagcctat
     1861 ggaaaaacgg ccgctgtgcg gcctttcctt ctttcctcca tgcgattact cggttttctc
     1921 gagcgtttct acgcatgctc ctgccgctcg ccgcagccga acggcaggag cgtagcgact
     1981 gagtgagcga ggaagcggaa aagaggagat ccctacactg accactgacg ctctgaggcc
     2041 tcttatgacg aaacaacaga aaacagcgct gaacatggct aaattcatcc agaatcagtc
     2101 tctgctcctg ctggagaagc ttaacgagct tgatctcgat gtcgaggccg acctttgtga
     2161 gaaactccac gatgatgcgg agcatctttt ccgtacactg tcctcgagac tggatgcatt
     2221 acaggatggt aactgatggc cagagtgtct attagtgagg ctgcccgact gacgggtaag
     2281 agtagaacaa cactgcacag gttaattaaa gcaggtgacc tgtccacctg tagcggtgag
     2341 cgcaatgcaa aaatggtaga tacttcagag cttttacgtg tctttggccc ctttgagcaa
     2401 ccgaagggtg aacaccattc tggacaggtc tctggacagc gtgatacagc ctctgctgac
     2461 cagagtgaac aggtgatccg tcatctgaaa caggagattg aacacctgaa caccttactt
     2521 ttgtccaagg attcgcacat tgacagcctg aaacaggcca tgctccttct tgaaaatcac
     2581 caggcaaaat taactgaatc cccggcgcca tggtggaaat tctggaaaaa atcctgaccc
     2641 cgtcatgctt cagttttcct ctccggccat cccagggagt tcctgaacct tcccaaaaat
     2701 cgtcagatct ctgaacgctc ctcaccacta aaaataccca caccccacgc aaaattaaaa
     2761 ttttgcagat tccttattta caacaatggg ttaatgaaaa ataaatgtgc ggtgatgtgt
     2821 tacaaagtgc agatccaagt cgtggacgac tctatggcga atcgctgacg aattgcccac
     2881 gattcatatg tgaatcacgc tttattatca tattgttatg atgaatcgac tcttgattca
     2941 attcatcact ttgggtgttt tttgctcatg gtgactcttg attcaattca cgattcgaat
     3001 cgccggtgaa tcgtgtggtg agtcgtccgg cgacttgcca taacgtgatt gccggccgtc
     3061 gacgaacccg attcctgaag gtgctgaaaa ccggttttcc ggctgcgccg gcaacgcttc
     3121 acggccacgc aataaattgc gtccccgttc accgttttcg gaggagaaga acgccggaaa
     3181 caggacttcc cctggctgaa tggtgtgaat ttccgcgcta tgcacttgcg cgcatactca
     3241 tgcatgccgt aaaaacagag cctgcgcgtt tctggcgggt tttcgggtgg tttgttgcct
     3301 gttttaccgg tttcccgtca gaaacgtcct gagtccgttt tagcggtgcg tacaattatg
     3361 attttatgtt aaattgtttt aagtgaatag agagaatata acttaaggga gcatcttgtg
     3421 ctgggtcttt tacattagat ctgcacaatc attgttttgg catctggtga tgtctttagg
     3481 acgtttgaga ttgctgataa ctaaagtgta tgatgctttc tatacgttat ccggcgttta
     3541 ataacaccct ggtgataagc cagcccgtga agggctggct tgatttggat ttatattttt
     3601 gaaataaaat cttttatttc atcaaagcaa ttgtctgctg tgtttattat tccatttttc
     3661 atggatattc ctattcttga gtcggattct ctattgcagc taagatagac ttgtacctta
     3721 gctttttttt cgtttgttgg ataagtgtac tctttgtcac tcgctgagat gtcatcttta
     3781 ttatttttaa ttttttcgaa aaattctatt atgtattcat ataacgctcg agtgcttgcg
     3841 tgttcaatta tcagatcttc aatggcacct tgcttgtctt ttcctggcat tataaagaaa
     3901 gaaatttttg tattgccatt catagctatc tcgttatgcg agctggggga ggagatttgt
     3961 agttctcgca atgtggcaat tattgatctt tctgtgtcag aaaatgatgt gtcagcatct
     4021 aatataataa aaatactttc tttttcatcg aaagaatcaa tgtttttgaa tgctctaagt
     4081 gcttgtttta attttgattt tccatttatt ttttcgacaa aaacatcggt aatgccttgt
     4141 atttcaagta ggttgcatag aaaatga
//
