LOCUS       NZ_OW970459             4167 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P7, complete sequence.
ACCESSION   NZ_OW970459
VERSION     NZ_OW970459.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082326
            Assembly: GCF_903993035.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993035.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:55:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,541
            CDSs (total)                      :: 5,421
            Genes (coding)                    :: 5,291
            CDSs (with protein)               :: 5,291
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 8, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 8, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 49 of 130
            Pseudo Genes (incomplete)         :: 80 of 130
            Pseudo Genes (internal stop)      :: 17 of 130
            Pseudo Genes (multiple problems)  :: 14 of 130
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970459.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P7"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            complement(join(3822..4167,1..770))
                     /locus_tag="LQV13_RS27560"
     CDS             complement(join(3822..4167,1..770))
                     /locus_tag="LQV13_RS27560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(1115..1228)
                     /locus_tag="LQV13_RS27565"
                     /pseudo=""
     CDS             complement(1115..1228)
                     /locus_tag="LQV13_RS27565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            1644..1835
                     /locus_tag="LQV13_RS27570"
                     /old_locus_tag="AI2767V1_5242"
     CDS             1644..1835
                     /locus_tag="LQV13_RS27570"
                     /old_locus_tag="AI2767V1_5242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1835..2236
                     /locus_tag="LQV13_RS27575"
                     /old_locus_tag="AI2767V1_5243"
     CDS             1835..2236
                     /locus_tag="LQV13_RS27575"
                     /old_locus_tag="AI2767V1_5243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2582..2824)
                     /locus_tag="LQV13_RS27580"
     CDS             complement(2582..2824)
                     /locus_tag="LQV13_RS27580"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(3190..3822)
                     /locus_tag="LQV13_RS27585"
                     /old_locus_tag="AI2767V1_5244"
     CDS             complement(3190..3822)
                     /locus_tag="LQV13_RS27585"
                     /old_locus_tag="AI2767V1_5244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     Typing          complement(1116..1523)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 gatatttcat ttagctcact aaatccaatg tctaaatata tttccttatt gttacctatc
       61 gcagatattg ctatatctac aattctgtca tctatttttt ttaagttttc tagtatgtct
      121 tttttccttt tttgtgttag taggctagat acatttgtaa ttgttgcctc tttgtttatc
      181 tttctggatg ttgttattat tgttgctgtc ttaaatttat aattaatccc atccctttcg
      241 ttttttattt cggattttat ttctacgcca tcttctttca attgcataga gaaaagctta
      301 ttggaaaccc tgtttttcgc attgggtgtc tcggtcacat ttatttttaa agagtttact
      361 gtggcctgag aaccgatagt ttgacgaggt atgttttggt tagatagtac ggtgtcaacg
      421 tttagagaca aacttgattc taatctctga tttgtttctg tttcatatgt ttgtgttact
      481 tcagagcgtt catctcgaat gactatggac atcttttgtg atgtgtccat atcatgaaag
      541 taactaaccc aaaatggctt gtttttgttt atttctgcca tttcttttct gaatgcttga
      601 atgtttaaca aaacagccgg gttttttaca tcataaaaac aaaaaatagc atccagtata
      661 gatgttttcc cgtagttgtt tttcccagct atgatattta aagtctttaa ttgctttaga
      721 tatagctcat tgaagcattt gaagttcttt aaacttattt cctttatcat gatagcctct
      781 gttcgtgttt ttgttatatg ccatacgatt tgttagtacc ttaataaaat gtacagcttt
      841 cattgtgatt agctagactt tatgtcaaag attaactttg attgcttgtg ttttaatcga
      901 ttttttttac tttcttcttg agattatctg gcagcagccg taagcttccg gctgtgaacg
      961 aaaaaaaccg ccttggcggg cggttttttc gaaaggttca gtagagttgg cgctctatga
     1021 accgaggtaa ctggcttaaa gggagcgcag tcaccaaaac tgttcgttta gtttagcttt
     1081 aactggcgta taacttcaag actaactccc taaatcagtt accagtggct gctgccagtg
     1141 gcgctttgtc gtgtctttcc gggttggact caagacgata gttaccggat taggcgcagc
     1201 agtcggactg aacggggggt tcgtgcatac agtccagctt ggagcgaact gcctacccgg
     1261 aactgagtgt caggcgtgga atgagacaaa cgcggccata acagcggaat gacaccggta
     1321 aaccgaaagg caggaacagg agagcgcacg agggagccat cagggggaaa cgcctggtat
     1381 ctttatagtc ctgtcgggtt tcgccaccac tgatttgagc gtcagattcc gtgatgctcg
     1441 tcaggggggc ggagcctatg gaaaaacggc cgctgtgcgg cctttccttc tttcctccat
     1501 gcgattactc ggttttctcg agcgtttcta cgcatgctcc tgccgctcgc cgcagccgaa
     1561 cggcaggagc gtagcgactg agtgagcgag gaagcggaaa agaggagatc cctacactga
     1621 ccactgacgc tctgaggcct cttatgacga aacaacagaa aacagcgctg aacatggcta
     1681 aattcatcca gaatcagtct ctgctcctgc tggagaagct taacgagctt gatctcgatg
     1741 tcgaggccga cctttgtgag aaactccacg atgatgcgga gcatcttttc cgtacactgt
     1801 cctcgagact ggatgcatta caggatggta actgatggcc agagtgtcta ttagtgaggc
     1861 tgcccgactg acgggtaaga gtagaacaac actgcacagg ttaattaaag caggtgacct
     1921 gtccacctgt agcggtgagc gcaatgcaaa aatggtagat acttcagagc ttttacgtgt
     1981 ctttggcccc tttgagcaac cgaagggtga acaccattct ggacaggtct ctggacagcg
     2041 tgatacagcc tctgctgacc agagtgaaca ggtgatccgt catctgaaac aggagattga
     2101 acacctgaac accttacttt tgtccaagga ttcgcacatt gacagcctga aacaggccat
     2161 gctccttctt gaaaatcacc aggcaaaatt aactgaatcc ccggcgccat ggtggaaatt
     2221 ctggaaaaaa tcctgacccc gtcatgcttc agttttcctc tccggccatc ccagggagtt
     2281 cctgaacctt cccaaaaatc gtcagatctc tgaacgctcc tcaccactaa aaatacccac
     2341 accccacgca aaattaaaat tttgcagatt ccttatttac aacaatgggt taatgaaaaa
     2401 taaatgtgcg gtgatgtgtt acaaagtgca gatccaagtc gtggacgact ctatggcgaa
     2461 tcgctgacga attgcccacg attcatatgt gaatcacgct ttattatcat attgttatga
     2521 tgaatcgact cttgattcaa ttcatcactt tgggtgtttt ttgctcatgg tgactcttga
     2581 ttcaattcac gattcgaatc gccggtgaat cgtgtggtga gtcgtccggc gacttgccat
     2641 aacgtgattg ccggccgtcg acgaacccga ttcctgaagg tgctgaaaac cggttttccg
     2701 gctgcgccgg caacgcttca cggccacgca ataaattgcg tccccgttca ccgttttcgg
     2761 aggagaagaa cgccggaaac aggacttccc ctggctgaat ggtgtgaatt tccgcgctat
     2821 gcacttgcgc gcatactcat gcatgccgta aaaacagagc ctgcgcgttt ctggcgggtt
     2881 ttcgggtggt ttgttgcctg ttttaccggt ttcccgtcag aaacgtcctg agtccgtttt
     2941 agcggtgcgt acaattatga ttttatgtta aattgtttta agtgaataga gagaatataa
     3001 cttaagggag catcttgtgc tgggtctttt acattagatc tgcacaatca ttgttttggc
     3061 atctggtgat gtctttagga cgtttgagat tgctgataac taaagtgtat gatgctttct
     3121 atacgttatc cggcgtttaa taacaccctg gtgataagcc agcccgtgaa gggctggctt
     3181 gatttggatt tatatttttg aaataaaatc ttttatttca tcaaagcaat tgtctgctgt
     3241 gtttattatt ccatttttca tggatattcc tattcttgag tcggattctc tattgcagct
     3301 aagatagact tgtaccttag cttttttttc gtttgttgga taagtgtact ctttgtcact
     3361 cgctgagatg tcatctttat tatttttaat tttttcgaaa aattctatta tgtattcata
     3421 taacgctcga gtgcttgcgt gttcaattat cagatcttca atggcacctt gcttgtcttt
     3481 tcctggcatt ataaagaaag aaatttttgt attgccattc atagctatct cgttatgcga
     3541 gctgggggag gagatttgta gttctcgcaa tgtggcaatt attgatcttt ctgtgtcaga
     3601 aaatgatgtg tcagcatcta atataataaa aatactttct ttttcatcga aagaatcaat
     3661 gtttttgaat gctctaagtg cttgttttaa ttttgatttt ccatttattt tttcgacaaa
     3721 aacatcggta atgccttgta tttcaagtag gttgcataga aaatgaaaat catcatcacc
     3781 ctcaacgaaa atgatctttt tgctattatt tatgtctttc attatcttac ctcccagtcg
     3841 ttctcaactg agtaggagaa atcatccata ttgaattgta cggctgttgg ttttagggag
     3901 ttcttttctc ttcctagtct aatataagcg atatcttcat ttttgctatc tatttcgttt
     3961 attgctcgta tcacatcttg actatgagtt gttgcaaata tttgattgtt gttttgtttt
     4021 gcagatgaaa ttaatgattt tattatgtct ttaattactg agtaatgtat tccgttctcg
     4081 atttcatcaa taagaataat tgagttttcc tgtaccagca ctgagctgat aaaagataat
     4141 gctcgactga taccctcgcc aagcatt
//
