LOCUS       NZ_OW970450             4052 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 101 plasmid P6, complete sequence.
ACCESSION   NZ_OW970450
VERSION     NZ_OW970450.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082320
            Assembly: GCF_903993205.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993205.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:46:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,615
            CDSs (total)                      :: 5,497
            Genes (coding)                    :: 5,365
            CDSs (with protein)               :: 5,365
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 54 of 132
            Pseudo Genes (incomplete)         :: 81 of 132
            Pseudo Genes (internal stop)      :: 19 of 132
            Pseudo Genes (multiple problems)  :: 17 of 132
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970450.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="101"
                     /isolation_source="Hospital Universitario Ramon y Cajal
                     (Madrid)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            complement(join(3775..4052,1..43))
                     /locus_tag="LQV08_RS27905"
                     /old_locus_tag="AI2898V1_5304"
     CDS             complement(join(3775..4052,1..43))
                     /locus_tag="LQV08_RS27905"
                     /old_locus_tag="AI2898V1_5304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_055318048.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQSCLDEKPARACRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGDD
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1430..1888
                     /locus_tag="LQV08_RS27910"
     CDS             1430..1888
                     /locus_tag="LQV08_RS27910"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(2396..2608)
                     /locus_tag="LQV08_RS27915"
                     /old_locus_tag="AI2898V1_5302"
     CDS             complement(2396..2608)
                     /locus_tag="LQV08_RS27915"
                     /old_locus_tag="AI2898V1_5302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2612..3097)
                     /locus_tag="LQV08_RS27920"
                     /old_locus_tag="AI2898V1_5303"
     CDS             complement(2612..3097)
                     /locus_tag="LQV08_RS27920"
                     /old_locus_tag="AI2898V1_5303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<3135..3812)
                     /locus_tag="LQV08_RS28140"
                     /pseudo=""
     CDS             complement(<3135..3812)
                     /locus_tag="LQV08_RS28140"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     Typing          complement(152..331)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          308..794
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.235"
                     /coverage="93.0"
                     /evalue="5.96e-162"
     Typing          complement(2281..3785)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.223"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcagccgccg gtgttcgtct tccgtcaccc acatcgtgag catcttgttg cgtttgtctg
       61 ccagagtagc ctcctgataa caccgggacg ggcgggaaat gtttcccggt cggcacggtg
      121 ttggacaagc cgcaggcgcg tcagtggctt ttagcgggtt tcggggcgca gccctgaacc
      181 agtcacgtag cgctagcgga gtgtatactg gctaaatatg ttacggcgga gtggtaatgt
      241 atgaaagtgc ttcatgtggg aaggggaaaa tgtggctgac gggcgtaagt gcaacatgct
      301 ggtaaaggtg aaatgacgcc tcctcgctca ctcagtcgct gcgctcctgc cgtgagactg
      361 cggcgggcgt taccagctca cagatgacgg gatacgcaag cagcgctcaa atcaggagaa
      421 gccgggaaga ggatgcggcg ttgccgtttt tccataggct ccgcccccct gacgagtatc
      481 ataaaatctg acgctcaaat cagtggtggc gaaacccgac aggactataa agatcccagg
      541 cgtttccccc tggtagctcc ctcgtgcgct ctcctgttcc tgccattcgg tttaccggtg
      601 tcattccgct gttatggccg cgtttgtctc attccacgcc tgacactcag ttccgggtag
      661 gcagttcgct ccaagctgga ctgtatgcac gatccccccg ttcagtccga ctaccacgct
      721 cttttcggta actatcgtct tgagtccaac ccgaaaaggc acgacaaatc gccattggca
      781 gtagccactg gtaaacagga tgtgcgagag atgtattcag agttcttgaa gtggtggcct
      841 tactgcggct acactggaag gacagctttg gtgacatgtc tcgcacaaga ctgttaccac
      901 ggttagtaaa tctgccagga ttaactaacc ttcgaaaaac cacctgccag ggtggttttt
      961 tcgtttacag agcaaaagac tacgctcaga aagagattat ctcaagaaga tcatctcttt
     1021 ctcttactca agtcaaagca aaaaaacacc actccatcac aaactcaggt tatagtcggt
     1081 atgcaactaa taacactgta atttctgtgc aaaatcgagg ttatgcatat gcaaatcaac
     1141 atcaactgca agagtatccc aacatctttc gatgttgtct gctcgaattg tgaatggacc
     1201 ggcgtggcta cattagatta tccggaaaac gtaaaaaccc tatctgtcgg aggagaaata
     1261 aatttcactc ataatgacga gacgccaaaa tgtccacaat gtagcgttgg atatatatat
     1321 ggtaaaagtg gcacttataa acgtaatagt gcaactaacc atatggacag aatcggagat
     1381 tataaagagt aaataatacg catcacagca atctaacgag ggaaatataa tgattgaaac
     1441 cacactactt gccgttctca ctggcgcatt aagcaatctt acttctgatg caatcaaagg
     1501 catcataggg aagttagcaa gtaaacatcc tgaagttgaa caacaagcct cactgcttga
     1561 aacaccatta ccttttgacg aagttgataa attattttct cagatgcagg gggccattca
     1621 ggctgcagca gccaatggtg aaattcagct agatggagct gaattaaaag cattgagcgg
     1681 aataaaattt gatcaccaag ccggaactgt tttgataaat ggatctcaag tacaagcgtc
     1741 aattttagtc actggtggag gtcaacatgc tactggaaaa acgatcatac aaggtgatac
     1801 gacaatgact agccagggta caagtataaa aatgtcaggt ggtgctcaaa tagtaatgac
     1861 tggtggagcc cgaatcattc agaactaata tgatttacca taacatctct tgcccgcacc
     1921 gctccggaca tgttcgtcac aaacggggcg gcagtcaggt aaaaccggca acaaaccacc
     1981 cgatacaccg ccccgttcgt gacagataaa ttttacccgg ctgcatggtc atgcagccag
     2041 atgcatacgg tctgatttca ggccagaatc tggatgaacg ccttaaaaac aggaaaatgc
     2101 ttctccagcc agtcccagat ctccagcgcc atgtacaggc agttcagcac cgtctcaatc
     2161 acgttaaaca gtctcataat ccctccgttg tatacgccgt gatgttttca tcacgaccgt
     2221 atttagcggg aaatttatga gcccttcttc gtggggtttg tcactggtga agcctgtcag
     2281 cccagcgtcg gaccgttata gctccgctga cgggaacggg cttccgccag ctctttttcg
     2341 tgctgtcgct gctcgtatgc ccgttcggcg gccaccgcca tttcatgccg ctgcactact
     2401 ggctcaaacg ctgtaactgc ctgctcaagt tcgccacctg ctgactcaag cgcgtgacgc
     2461 gctcgttcag cgccgcgttc tcccgttgca taagaccaga catcttctgc cattccgcga
     2521 aggcgctctc ccactcgtcc agcctttgcg agtagtcctg atgtagctgc tctaatgcgg
     2581 tcagcaactg tttttccagt tccgtcatgg gctatttcct ctccagtacc atccagttcc
     2641 cttcctcccc gtaagctccc gctttcgggt tcactttgac gcaggacagt ttcttctccc
     2701 cgcagagcga cagctgaacg ccgtggtttt tctccgacaa catggcctgc gtccgctcct
     2761 gcgcccggat agtctggtaa ttcccggtga tctgctgccc ctgccaccac agaatgctcc
     2821 cgctcatggc gatcagcagt accgagacca gggtgatggt cagccacgtc cggccgacca
     2881 tacgcagcac gctcaggcgg ttcgactgca tcgccgcggt cataccctgc tcgtgggcgc
     2941 tgatggcgtc gctgattctc ttcgcgcttg cgctcagttc cgcttttaca gatttctcgt
     3001 gctcgctgaa tgcggctttc agcatctcgc cggtactctg ctgctgcgct ttcgattgct
     3061 gctccaagtc cttcgccagc gctaaaagac tgctcataaa tggctccctt cagtcggatg
     3121 tttcgccccc cgtccgggtc ggcaatgctg atactgtttt ttgtagtgcg gaccacctca
     3181 aaacctgccg ctgtgagcgc acctgtgacg tcctcgcgag ttttgagctc cccggatgag
     3241 gctaaggcca gcaacccacg tgtaatcgcc tgagcggctt ccagcttcgt ttccggcagt
     3301 gcggacggcg taaccagtaa ccgccggttc tccggggcgt ttggatcatg cagtcccagt
     3361 ctgccgttca ccacggtctg ccaggcatcg atgcgcggcc ggtcggcgcg atcgtaatac
     3421 ggctgcaggc gtttcccggt cagcagttca gtgttgggga tcaggaaatt cagctccagc
     3481 cgccccttgt cggtgtgctc cacccacaga atgctgtact ggtctttatc gagcccgggc
     3541 atcagaaccc gctcaaagct ggccatgatc tgctcccgct gcccgggcag cagttcagcc
     3601 tccgcgaacg acagcacgcc ggaggtgtac tttttcgcat acggcgaggc atcgataagc
     3661 tcccggactt cctccggttt tccctgcagc acggtcgccc cctcgcgctg ccggtctttt
     3721 cccagcaggt aatccaccgg accggcacca ccaccgcgcc cccggggatg aaatttaacg
     3781 atcatcatcc cccccttttt ccagcaccgc atgccgcagc cgctccagtc ccgcgtctat
     3841 tgccatcagg gcggccacaa tctgcacccg atcatgaccg gcaccaacgg cattcacttt
     3901 ccgggcgatc tggttcaggt tgttacccat accggcaagc tggcgcagca gcgccggcga
     3961 tattgacggc agtctgcagg cacgcgccgg cttctcatcg aggcaggact gacgcatcca
     4021 cgccgccagc tgcctgccgt cgcaccgctc ga
//
