LOCUS       NZ_OW970449             4713 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 101 plasmid P5, complete sequence.
ACCESSION   NZ_OW970449
VERSION     NZ_OW970449.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082320
            Assembly: GCF_903993205.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993205.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:46:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,615
            CDSs (total)                      :: 5,497
            Genes (coding)                    :: 5,365
            CDSs (with protein)               :: 5,365
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 54 of 132
            Pseudo Genes (incomplete)         :: 81 of 132
            Pseudo Genes (internal stop)      :: 19 of 132
            Pseudo Genes (multiple problems)  :: 17 of 132
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970449.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4713
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="101"
                     /isolation_source="Hospital Universitario Ramon y Cajal
                     (Madrid)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P5"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            complement(671..1072)
                     /locus_tag="LQV08_RS27875"
                     /old_locus_tag="AI2898V1_5297"
     CDS             complement(671..1072)
                     /locus_tag="LQV08_RS27875"
                     /old_locus_tag="AI2898V1_5297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_009310048.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1072..1263)
                     /locus_tag="LQV08_RS27880"
                     /old_locus_tag="AI2898V1_5298"
     CDS             complement(1072..1263)
                     /locus_tag="LQV08_RS27880"
                     /old_locus_tag="AI2898V1_5298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1679..1792
                     /locus_tag="LQV08_RS28135"
     CDS             1679..1792
                     /locus_tag="LQV08_RS28135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071785923.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHDLSPLAAATGN"
                     /name="replication initiation protein"
     gene            2200..2871
                     /locus_tag="LQV08_RS27885"
                     /old_locus_tag="AI2898V1_5299"
     CDS             2200..2871
                     /locus_tag="LQV08_RS27885"
                     /old_locus_tag="AI2898V1_5299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_179186626.1"
                     /translation="MLIVILSLYYTITEPFKSELIKNLSYSLIATFIFDTGLNFSKENI
                     TKSIVSRKWHNSLYFAFERLRAIHEIFTAQNKLEITKELASDMASSILMENGAVISKKH
                     IKTMWNPSSGEPLTYQDIVIKEGDNLYFASMMFIRDDYEFLHSIYFDENIFLSFPQLLK
                     PAQKCYRSLAMIQHNINSKQKFNVTKKSLERDLINYLELRSTLLMKMEDVLGHYEQRAP
                     Q"
                     /name="hypothetical protein"
     gene            3195..3626
                     /locus_tag="LQV08_RS27890"
     CDS             3195..3626
                     /locus_tag="LQV08_RS27890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086073960.1"
                     /translation="MDWYDVKWFFGDVCDSVSEVAGNIYDTAADGVAAVTDFIEENPKT
                     SIAIGALVGIATAGIAAPAIAATIGATGALGTTAGGTVIANLSGAALSSSSLAALGGGS
                     IAAGGAGMAGGTCVVAAGGGVVAGSVSAGGVAATKAIKS"
                     /name="hypothetical protein"
     gene            complement(3714..4058)
                     /locus_tag="LQV08_RS27895"
     CDS             complement(3714..4058)
                     /locus_tag="LQV08_RS27895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014542127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032431017.1"
                     /translation="MANSFNVTIAEAALWSLQDAESFKSNYTDSVQAALWADDLLASSI
                     KAISQDPDRYRYNAMLADKGISIRERLDPDNQYRCLYDFDEQNGVIEILLFVSTKQDLE
                     KMLYRYLVVK"
                     /name="hypothetical protein"
     gene            complement(4073..4342)
                     /locus_tag="LQV08_RS27900"
     CDS             complement(4073..4342)
                     /locus_tag="LQV08_RS27900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012822261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024167138.1"
                     /translation="MSITMSQKSAREGLGNPELFQGGVYVTKNGLAELFVQTAEEREAE
                     LRERERERQSNALLKLVMAAKREIKNGRGMSPEDAMRRLREART"
                     /name="hypothetical protein"
     Typing          1385..1792
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.377"
                     /coverage="99.0"
                     /evalue="1.26e-177"
ORIGIN
        1 taaaacaggc aacaaaccac ccgaaaaccc gccagaaacg cgcaggctct gtttttacgg
       61 catgcatgag tatgcacgca agtgcatagc gcgaaaattc acgccattca gccaggataa
      121 gtcctgtttc cggcgttctt tccatccgaa aacggtgaac ggggacgcaa tttattgcgt
      181 ggccgtgaag cgttgccggc gcagccggaa aaccggtttt cagcacgatc aggaatcggg
      241 ttcgtcgacg gccggcaatc acgttatggc aagtcgccgg acgactcacc agacaattca
      301 ccggcgattc gactcgtgac ttgactctag agtcgtcaag gtcaaaaaaa caccaaaatg
      361 acgattcgac tctagagtca agtcgtcata agttactgat agtcttaagt gagtcgtcga
      421 tgactctatg acgagtcgtc ggcaagtcgt acacgaatcg ccgacgactt ggattcacct
      481 tacagaaagt aatactgcgt aatttaataa cccacaacta actgatatta atgagttatc
      541 ttcaaaattt taattttgcg tggggtgtgg gtatttttag tggtgaggag cgttcagaga
      601 tctgacgatt tttgggaagg ttcaggaact ccccgggatg gccggagagg aaaactgaag
      661 catgacgggg tcaggatttt ttccagaatt tccaccatgg cgccggggat tcagttaatt
      721 ttgcctggtg attttcaaga aggagcatgg cctgtttcag gctgtcaatg tgcgaatcct
      781 tggacaaaag taaggtgttc aggtgttcaa tctcctgttt cagatgacga atcacctgtt
      841 cactctggtc agcagaggct gtatcacgct gttcagagac ctgtccagaa tggtgttcac
      901 ccttcggttg ttcaaaggga ccaaagacac gtaaaagctc tgaagtatct accatttttg
      961 cattgcgttc accgctacag gtggacaggt cacctgcttt aattaacctg tgcagtgttg
     1021 ttctactctt acccgtcagt cgggcagcct cactaataga cactctggcc atcagttacc
     1081 atcctgtaat gcatccagtc tcgaggacag tgtacggaaa agatgctccg catcatcgtg
     1141 gagtttctca caaaggtcgg cttcgacatc gagatcaagc tcgttaagct tctccagcag
     1201 gagcagagac tggttctgga tgaatttagc catattcagc gctgttttct gttgtttcgt
     1261 cataagaggc ctcagagcgt cagtgctcag tgtagggatg ttctcttttc cgcttcctcg
     1321 ctcactcagt cgctacgctc ctgccgttcg gctgcggcga gcggcaggag catgcgtaga
     1381 aacgctcgag aaaaccgagc aatcgcatgg tggaaagaag gaaaggccgc gcagcggccg
     1441 tttttccata ggctccgccc ccctgacaag catcacagaa actgacgctc aaatcagtgg
     1501 tggcgaaacc cgacaggact ataaagatat caggcgtttc cccctgatgg ctccctcgtg
     1561 cgctctcctg ttcctgcctt tcggtttacc ggtgtcattc cgctgttatg gccgcgttta
     1621 tctcattcca cgcctgacac tcagttccgg gtaggcagtt cgctccaagc tggactgtat
     1681 gcacgaaccc cccgttcagt ccgactgctg cgccttatcc ggtaactatc gtcttgagtc
     1741 caacccagaa agacacgact tatcgccact ggcagcagcc actggtaact gatttagagg
     1801 agttagtctt gaagttatgc gccagttaag gctaaactaa acgaacagtt ttggtgactg
     1861 tgctcctcta actagccagt tacctaggtt caacgagcgc caactcttag aaccttcgaa
     1921 aaaaccgccc tgcaaggcgg ttttttctta ttagcaggga agagattacg atgacttgct
     1981 gaagatctca agaaaatcat tcatcaccga tatcgaggag tgataagatt ggttaacttt
     2041 atattattca ttatattatt cacatacaca tgtatttttt gtttcacccc cccgaggaga
     2101 caatataaat caatatctct aatccctcaa aaaataaaag caccattaaa tagatatcgt
     2161 ttatacatat attcatctgg tgcaatacga caatcactaa tgttaattgt tatattatct
     2221 ctctattata caattacaga accatttaaa tcagaattaa ttaaaaactt atcctattca
     2281 ttaatcgcaa cttttatttt tgacaccggc ttaaacttca gcaaagaaaa tataacaaaa
     2341 agtatagtat ccaggaaatg gcacaattct ttatactttg catttgaaag attaagagca
     2401 atacatgaaa tattcacagc acaaaacaaa ctagagatca caaaagaact agccagcgac
     2461 atggcgtcat ccatactaat ggaaaatgga gctgttatat ctaaaaaaca cataaaaaca
     2521 atgtggaacc cttcttcagg agaaccactt acgtatcaag acatagtaat aaaagaaggg
     2581 gataacttat actttgcgtc tatgatgttc atcagagatg attatgaatt cctacacagt
     2641 atttattttg atgaaaatat atttctctcc ttccctcaac tactaaaacc agcccaaaaa
     2701 tgttaccgat cactagcaat gatacagcat aatataaaca gcaaacaaaa atttaacgtc
     2761 acaaaaaaat cattagaaag agatctaatt aattatttag aactgagatc tacattatta
     2821 atgaaaatgg aagatgttct tggccactat gaacaaagag caccacaata atatcaatgt
     2881 cactttcatc tttaaattta aaaaaggcaa tgagataagt aagattgaac ataaagaaat
     2941 gattgtgcat aaataaaaaa cgtttggcgt tccccccccc ccccctgaaa gctatttgta
     3001 gcaactttca atccaatcta tcgaaccatc gaagaattta ccaacataac cagttccact
     3061 caccataatt atgcatgggc ctgcgatcat tttattgcct ttaaaaaaca ttgcttttaa
     3121 tatgtgtatt atatcttccg tgcaatcaaa aaagattaat tacttaataa atcatatggt
     3181 taagagggta gcatatggac tggtacgacg ttaaatggtt tttcggagac gtctgtgact
     3241 ctgtttcaga ggtggcaggc aatatttacg atactgcagc tgatggggta gcggctgtaa
     3301 ctgatttcat tgaagaaaat ccaaaaacat ccattgcgat aggagccctt gtaggtattg
     3361 cgacagcagg catagcagct ccggcaatag cggcaacaat tggagcaacc ggagcgctag
     3421 gaactacagc tggaggtacc gtaatagcaa acttaagtgg agcagcatta tctagctcgt
     3481 ctttagcagc gttgggtgga ggttccatcg cagctggagg agccggtatg gctggcggaa
     3541 catgtgtagt agccgcggga ggaggagtgg tcgctggaag cgtttctgct ggaggagtgg
     3601 cagcaacaaa agcgataaaa agctaacaag cttccattta ccataacgtc gacatcttaa
     3661 agtttctacc atataaaaag cccactataa aagcgggctt ttgcatttaa catctattta
     3721 acaacaagat atctgtaaag cattttctca agatcttgct tagtgctaac aaaaagcagg
     3781 atctcaatga caccattttg ttcatcaaaa tcatataaac aacgatactg gttatcgggg
     3841 tccaaacgct cacgaatcga tattccttta tcagccaaca tagcattgta gcgataacga
     3901 tcaggatctt gagaaatggc ctttatcgat gaagccaaaa gatcatcagc ccataacgca
     3961 gcttgaacac tatccgtgta gtttgattta aaggattctg catcctgcag agaccatagt
     4021 gccgcttccg cgatcgttac attgaatgaa tttgccaagt tggctcctta tattaagttc
     4081 gcgcttcacg taacctccgc atagcatctt cgggggacat tccacgacca ttttttatct
     4141 ctctctttgc agccatgact agcttcaaaa gagcatttga ttgccgttct ctttctctct
     4201 cacgcagctc ggcctctctc tcttctgcgg tctgtacgaa cagctctgct aaaccatttt
     4261 tcgtaacata aacgcctcct tggaacagtt cagggttgcc aagaccttca cgggctgact
     4321 tctgagacat agttatagac atacttatac ctttaattaa aacagccact tacacgcaag
     4381 attaagcata agcgactaga tcctgaatga aaaagaggtc aaaaagacct cacatcttgc
     4441 tgccacttag ggtgaatggc agttatattg tatcaaaact cacaggggag tacaaattta
     4501 tcataaatat atacaccacc attcaaatat aagattctgg agcttcgacc aacctcctat
     4561 taaacgaaaa ttacgcgcat cagtaaggca tccccagctc aggaacaatc cccattcttc
     4621 tactatcgag attttttcgt ctgttattta acataaagcc atgattgtac gcaccgccag
     4681 aacggcctca gggcgtttct gacgggaaac cgg
//
