LOCUS       NZ_OW970443             4167 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P7, complete sequence.
ACCESSION   NZ_OW970443
VERSION     NZ_OW970443.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082324
            Assembly: GCF_903993105.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993105.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 11:23:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,573
            CDSs (total)                      :: 5,451
            Genes (coding)                    :: 5,322
            CDSs (with protein)               :: 5,322
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 49 of 129
            Pseudo Genes (incomplete)         :: 79 of 129
            Pseudo Genes (internal stop)      :: 17 of 129
            Pseudo Genes (multiple problems)  :: 14 of 129
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970443.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P7"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            join(4086..4167,1..110)
                     /locus_tag="LQV41_RS27710"
     CDS             join(4086..4167,1..110)
                     /locus_tag="LQV41_RS27710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            110..511
                     /locus_tag="LQV41_RS27715"
                     /old_locus_tag="AI2765V1_5265"
     CDS             110..511
                     /locus_tag="LQV41_RS27715"
                     /old_locus_tag="AI2765V1_5265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(857..1099)
                     /locus_tag="LQV41_RS27720"
     CDS             complement(857..1099)
                     /locus_tag="LQV41_RS27720"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(1465..2097)
                     /locus_tag="LQV41_RS27725"
                     /old_locus_tag="AI2765V1_5266"
     CDS             complement(1465..2097)
                     /locus_tag="LQV41_RS27725"
                     /old_locus_tag="AI2765V1_5266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(2097..3212)
                     /locus_tag="LQV41_RS27730"
                     /old_locus_tag="AI2765V1_5267"
     CDS             complement(2097..3212)
                     /locus_tag="LQV41_RS27730"
                     /old_locus_tag="AI2765V1_5267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(3557..3670)
                     /locus_tag="LQV41_RS27735"
                     /pseudo=""
     CDS             complement(3557..3670)
                     /locus_tag="LQV41_RS27735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          complement(3558..3965)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 agcttgatct cgatgtcgag gccgaccttt gtgagaaact ccacgatgat gcggagcatc
       61 ttttccgtac actgtcctcg agactggatg cattacagga tggtaactga tggccagagt
      121 gtctattagt gaggctgccc gactgacggg taagagtaga acaacactgc acaggttaat
      181 taaagcaggt gacctgtcca cctgtagcgg tgagcgcaat gcaaaaatgg tagatacttc
      241 agagctttta cgtgtctttg gcccctttga gcaaccgaag ggtgaacacc attctggaca
      301 ggtctctgga cagcgtgata cagcctctgc tgaccagagt gaacaggtga tccgtcatct
      361 gaaacaggag attgaacacc tgaacacctt acttttgtcc aaggattcgc acattgacag
      421 cctgaaacag gccatgctcc ttcttgaaaa tcaccaggca aaattaactg aatccccggc
      481 gccatggtgg aaattctgga aaaaatcctg accccgtcat gcttcagttt tcctctccgg
      541 ccatcccagg gagttcctga accttcccaa aaatcgtcag atctctgaac gctcctcacc
      601 actaaaaata cccacacccc acgcaaaatt aaaattttgc agattcctta tttacaacaa
      661 tgggttaatg aaaaataaat gtgcggtgat gtgttacaaa gtgcagatcc aagtcgtgga
      721 cgactctatg gcgaatcgct gacgaattgc ccacgattca tatgtgaatc acgctttatt
      781 atcatattgt tatgatgaat cgactcttga ttcaattcat cactttgggt gttttttgct
      841 catggtgact cttgattcaa ttcacgattc gaatcgccgg tgaatcgtgt ggtgagtcgt
      901 ccggcgactt gccataacgt gattgccggc cgtcgacgaa cccgattcct gaaggtgctg
      961 aaaaccggtt ttccggctgc gccggcaacg cttcacggcc acgcaataaa ttgcgtcccc
     1021 gttcaccgtt ttcggaggag aagaacgccg gaaacaggac ttcccctggc tgaatggtgt
     1081 gaatttccgc gctatgcact tgcgcgcata ctcatgcatg ccgtaaaaac agagcctgcg
     1141 cgtttctggc gggttttcgg gtggtttgtt gcctgtttta ccggtttccc gtcagaaacg
     1201 tcctgagtcc gttttagcgg tgcgtacaat tatgatttta tgttaaattg ttttaagtga
     1261 atagagagaa tataacttaa gggagcatct tgtgctgggt cttttacatt agatctgcac
     1321 aatcattgtt ttggcatctg gtgatgtctt taggacgttt gagattgctg ataactaaag
     1381 tgtatgatgc tttctatacg ttatccggcg tttaataaca ccctggtgat aagccagccc
     1441 gtgaagggct ggcttgattt ggatttatat ttttgaaata aaatctttta tttcatcaaa
     1501 gcaattgtct gctgtgttta ttattccatt tttcatggat attcctattc ttgagtcgga
     1561 ttctctattg cagctaagat agacttgtac cttagctttt ttttcgtttg ttggataagt
     1621 gtactctttg tcactcgctg agatgtcatc tttattattt ttaatttttt cgaaaaattc
     1681 tattatgtat tcatataacg ctcgagtgct tgcgtgttca attatcagat cttcaatggc
     1741 accttgcttg tcttttcctg gcattataaa gaaagaaatt tttgtattgc cattcatagc
     1801 tatctcgtta tgcgagctgg gggaggagat ttgtagttct cgcaatgtgg caattattga
     1861 tctttctgtg tcagaaaatg atgtgtcagc atctaatata ataaaaatac tttctttttc
     1921 atcgaaagaa tcaatgtttt tgaatgctct aagtgcttgt tttaattttg attttccatt
     1981 tattttttcg acaaaaacat cggtaatgcc ttgtatttca agtaggttgc atagaaaatg
     2041 aaaatcatca tcaccctcaa cgaaaatgat ctttttgcta ttatttatgt ctttcattat
     2101 cttacctccc agtcgttctc aactgagtag gagaaatcat ccatattgaa ttgtacggct
     2161 gttggtttta gggagttctt ttctcttcct agtctaatat aagcgatatc ttcatttttg
     2221 ctatctattt cgtttattgc tcgtatcaca tcttgactat gagttgttgc aaatatttga
     2281 ttgttgtttt gttttgcaga tgaaattaat gattttatta tgtctttaat tactgagtaa
     2341 tgtattccgt tctcgatttc atcaataaga ataattgagt tttcctgtac cagcactgag
     2401 ctgataaaag ataatgctcg actgataccc tcgccaagca ttgatatttc atttagctca
     2461 ctaaatccaa tgtctaaata tatttcctta ttgttaccta tcgcagatat tgctatatct
     2521 acaattctgt catctatttt ttttaagttt tctagtatgt cttttttcct tttttgtgtt
     2581 agtaggctag atacatttgt aattgttgcc tctttgttta tctttctgga tgttgttatt
     2641 attgttgctg tcttaaattt ataattaatc ccatcccttt cgttttttat ttcggatttt
     2701 atttctacgc catcttcttt caattgcata gagaaaagct tattggaaac cctgtttttc
     2761 gcattgggtg tctcggtcac atttattttt aaagagttta ctgtggcctg agaaccgata
     2821 gtttgacgag gtatgttttg gttagatagt acggtgtcaa cgtttagaga caaacttgat
     2881 tctaatctct gatttgtttc tgtttcatat gtttgtgtta cttcagagcg ttcatctcga
     2941 atgactatgg acatcttttg tgatgtgtcc atatcatgaa agtaactaac ccaaaatggc
     3001 ttgtttttgt ttatttctgc catttctttt ctgaatgctt gaatgtttaa caaaacagcc
     3061 gggtttttta catcataaaa acaaaaaata gcatccagta tagatgtttt cccgtagttg
     3121 tttttcccag ctatgatatt taaagtcttt aattgcttta gatatagctc attgaagcat
     3181 ttgaagttct ttaaacttat ttcctttatc atgatagcct ctgttcgtgt ttttgttata
     3241 tgccatacga tttgttagta ccttaataaa atgtacagct ttcattgtga ttagctagac
     3301 tttatgtcaa agattaactt tgattgcttg tgttttaatc gatttttttt actttcttct
     3361 tgagattatc tggcagcagc cgtaagcttc cggctgtgaa cgaaaaaaac cgccttggcg
     3421 ggcggttttt tcgaaaggtt cagtagagtt ggcgctctat gaaccgaggt aactggctta
     3481 aagggagcgc agtcaccaaa actgttcgtt tagtttagct ttaactggcg tataacttca
     3541 agactaactc cctaaatcag ttaccagtgg ctgctgccag tggcgctttg tcgtgtcttt
     3601 ccgggttgga ctcaagacga tagttaccgg attaggcgca gcagtcggac tgaacggggg
     3661 gttcgtgcat acagtccagc ttggagcgaa ctgcctaccc ggaactgagt gtcaggcgtg
     3721 gaatgagaca aacgcggcca taacagcgga atgacaccgg taaaccgaaa ggcaggaaca
     3781 ggagagcgca cgagggagcc atcaggggga aacgcctggt atctttatag tcctgtcggg
     3841 tttcgccacc actgatttga gcgtcagatt ccgtgatgct cgtcaggggg gcggagccta
     3901 tggaaaaacg gccgctgtgc ggcctttcct tctttcctcc atgcgattac tcggttttct
     3961 cgagcgtttc tacgcatgct cctgccgctc gccgcagccg aacggcagga gcgtagcgac
     4021 tgagtgagcg aggaagcgga aaagaggaga tccctacact gaccactgac gctctgaggc
     4081 ctcttatgac gaaacaacag aaaacagcgc tgaacatggc taaattcatc cagaatcagt
     4141 ctctgctcct gctggagaag cttaacg
//
