LOCUS       NZ_OW970420             4167 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P7, complete sequence.
ACCESSION   NZ_OW970420
VERSION     NZ_OW970420.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082333
            Assembly: GCF_903993055.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993055.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 04:03:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,550
            CDSs (total)                      :: 5,429
            Genes (coding)                    :: 5,292
            CDSs (with protein)               :: 5,292
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 49 of 137
            Pseudo Genes (incomplete)         :: 87 of 137
            Pseudo Genes (internal stop)      :: 17 of 137
            Pseudo Genes (multiple problems)  :: 14 of 137
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970420.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P7"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            353..595
                     /locus_tag="LQV26_RS27595"
     CDS             353..595
                     /locus_tag="LQV26_RS27595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(941..1342)
                     /locus_tag="LQV26_RS27600"
                     /old_locus_tag="AI2998V1_5246"
     CDS             complement(941..1342)
                     /locus_tag="LQV26_RS27600"
                     /old_locus_tag="AI2998V1_5246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1342..1533)
                     /locus_tag="LQV26_RS27605"
                     /old_locus_tag="AI2998V1_5247"
     CDS             complement(1342..1533)
                     /locus_tag="LQV26_RS27605"
                     /old_locus_tag="AI2998V1_5247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1949..2062
                     /locus_tag="LQV26_RS27610"
                     /pseudo=""
     CDS             1949..2062
                     /locus_tag="LQV26_RS27610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2407..3522
                     /locus_tag="LQV26_RS27615"
                     /old_locus_tag="AI2998V1_5248"
     CDS             2407..3522
                     /locus_tag="LQV26_RS27615"
                     /old_locus_tag="AI2998V1_5248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            3522..4154
                     /locus_tag="LQV26_RS27620"
                     /old_locus_tag="AI2998V1_5249"
     CDS             3522..4154
                     /locus_tag="LQV26_RS27620"
                     /old_locus_tag="AI2998V1_5249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     Typing          1655..2062
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 cagcccttca cgggctggct tatcaccagg gtgttattaa acgccggata acgtatagaa
       61 agcatcatac actttagtta tcagcaatct caaacgtcct aaagacatca ccagatgcca
      121 aaacaatgat tgtgcagatc taatgtaaaa gacccagcac aagatgctcc cttaagttat
      181 attctctcta ttcacttaaa acaatttaac ataaaatcat aattgtacgc accgctaaaa
      241 cggactcagg acgtttctga cgggaaaccg gtaaaacagg caacaaacca cccgaaaacc
      301 cgccagaaac gcgcaggctc tgtttttacg gcatgcatga gtatgcgcgc aagtgcatag
      361 cgcggaaatt cacaccattc agccagggga agtcctgttt ccggcgttct tctcctccga
      421 aaacggtgaa cggggacgca atttattgcg tggccgtgaa gcgttgccgg cgcagccgga
      481 aaaccggttt tcagcacctt caggaatcgg gttcgtcgac ggccggcaat cacgttatgg
      541 caagtcgccg gacgactcac cacacgattc accggcgatt cgaatcgtga attgaatcaa
      601 gagtcaccat gagcaaaaaa cacccaaagt gatgaattga atcaagagtc gattcatcat
      661 aacaatatga taataaagcg tgattcacat atgaatcgtg ggcaattcgt cagcgattcg
      721 ccatagagtc gtccacgact tggatctgca ctttgtaaca catcaccgca catttatttt
      781 tcattaaccc attgttgtaa ataaggaatc tgcaaaattt taattttgcg tggggtgtgg
      841 gtatttttag tggtgaggag cgttcagaga tctgacgatt tttgggaagg ttcaggaact
      901 ccctgggatg gccggagagg aaaactgaag catgacgggg tcaggatttt ttccagaatt
      961 tccaccatgg cgccggggat tcagttaatt ttgcctggtg attttcaaga aggagcatgg
     1021 cctgtttcag gctgtcaatg tgcgaatcct tggacaaaag taaggtgttc aggtgttcaa
     1081 tctcctgttt cagatgacgg atcacctgtt cactctggtc agcagaggct gtatcacgct
     1141 gtccagagac ctgtccagaa tggtgttcac ccttcggttg ctcaaagggg ccaaagacac
     1201 gtaaaagctc tgaagtatct accatttttg cattgcgctc accgctacag gtggacaggt
     1261 cacctgcttt aattaacctg tgcagtgttg ttctactctt acccgtcagt cgggcagcct
     1321 cactaataga cactctggcc atcagttacc atcctgtaat gcatccagtc tcgaggacag
     1381 tgtacggaaa agatgctccg catcatcgtg gagtttctca caaaggtcgg cctcgacatc
     1441 gagatcaagc tcgttaagct tctccagcag gagcagagac tgattctgga tgaatttagc
     1501 catgttcagc gctgttttct gttgtttcgt cataagaggc ctcagagcgt cagtggtcag
     1561 tgtagggatc tcctcttttc cgcttcctcg ctcactcagt cgctacgctc ctgccgttcg
     1621 gctgcggcga gcggcaggag catgcgtaga aacgctcgag aaaaccgagt aatcgcatgg
     1681 aggaaagaag gaaaggccgc acagcggccg tttttccata ggctccgccc ccctgacgag
     1741 catcacggaa tctgacgctc aaatcagtgg tggcgaaacc cgacaggact ataaagatac
     1801 caggcgtttc cccctgatgg ctccctcgtg cgctctcctg ttcctgcctt tcggtttacc
     1861 ggtgtcattc cgctgttatg gccgcgtttg tctcattcca cgcctgacac tcagttccgg
     1921 gtaggcagtt cgctccaagc tggactgtat gcacgaaccc cccgttcagt ccgactgctg
     1981 cgcctaatcc ggtaactatc gtcttgagtc caacccggaa agacacgaca aagcgccact
     2041 ggcagcagcc actggtaact gatttaggga gttagtcttg aagttatacg ccagttaaag
     2101 ctaaactaaa cgaacagttt tggtgactgc gctcccttta agccagttac ctcggttcat
     2161 agagcgccaa ctctactgaa cctttcgaaa aaaccgcccg ccaaggcggt ttttttcgtt
     2221 cacagccgga agcttacggc tgctgccaga taatctcaag aagaaagtaa aaaaaatcga
     2281 ttaaaacaca agcaatcaaa gttaatcttt gacataaagt ctagctaatc acaatgaaag
     2341 ctgtacattt tattaaggta ctaacaaatc gtatggcata taacaaaaac acgaacagag
     2401 gctatcatga taaaggaaat aagtttaaag aacttcaaat gcttcaatga gctatatcta
     2461 aagcaattaa agactttaaa tatcatagct gggaaaaaca actacgggaa aacatctata
     2521 ctggatgcta ttttttgttt ttatgatgta aaaaacccgg ctgttttgtt aaacattcaa
     2581 gcattcagaa aagaaatggc agaaataaac aaaaacaagc cattttgggt tagttacttt
     2641 catgatatgg acacatcaca aaagatgtcc atagtcattc gagatgaacg ctctgaagta
     2701 acacaaacat atgaaacaga aacaaatcag agattagaat caagtttgtc tctaaacgtt
     2761 gacaccgtac tatctaacca aaacatacct cgtcaaacta tcggttctca ggccacagta
     2821 aactctttaa aaataaatgt gaccgagaca cccaatgcga aaaacagggt ttccaataag
     2881 cttttctcta tgcaattgaa agaagatggc gtagaaataa aatccgaaat aaaaaacgaa
     2941 agggatggga ttaattataa atttaagaca gcaacaataa taacaacatc cagaaagata
     3001 aacaaagagg caacaattac aaatgtatct agcctactaa cacaaaaaag gaaaaaagac
     3061 atactagaaa acttaaaaaa aatagatgac agaattgtag atatagcaat atctgcgata
     3121 ggtaacaata aggaaatata tttagacatt ggatttagtg agctaaatga aatatcaatg
     3181 cttggcgagg gtatcagtcg agcattatct tttatcagct cagtgctggt acaggaaaac
     3241 tcaattattc ttattgatga aatcgagaac ggaatacatt actcagtaat taaagacata
     3301 ataaaatcat taatttcatc tgcaaaacaa aacaacaatc aaatatttgc aacaactcat
     3361 agtcaagatg tgatacgagc aataaacgaa atagatagca aaaatgaaga tatcgcttat
     3421 attagactag gaagagaaaa gaactcccta aaaccaacag ccgtacaatt caatatggat
     3481 gatttctcct actcagttga gaacgactgg gaggtaagat aatgaaagac ataaataata
     3541 gcaaaaagat cattttcgtt gagggtgatg atgattttca ttttctatgc aacctacttg
     3601 aaatacaagg cattaccgat gtttttgtcg aaaaaataaa tggaaaatca aaattaaaac
     3661 aagcacttag agcattcaaa aacattgatt ctttcgatga aaaagaaagt atttttatta
     3721 tattagatgc tgacacatca ttttctgaca cagaaagatc aataattgcc acattgcgag
     3781 aactacaaat ctcctccccc agctcgcata acgagatagc tatgaatggc aatacaaaaa
     3841 tttctttctt tataatgcca ggaaaagaca agcaaggtgc cattgaagat ctgataattg
     3901 aacacgcaag cactcgagcg ttatatgaat acataataga atttttcgaa aaaattaaaa
     3961 ataataaaga tgacatctca gcgagtgaca aagagtacac ttatccaaca aacgaaaaaa
     4021 aagctaaggt acaagtctat cttagctgca atagagaatc cgactcaaga ataggaatat
     4081 ccatgaaaaa tggaataata aacacagcag acaattgctt tgatgaaata aaagatttta
     4141 tttcaaaaat ataaatccaa atcaagc
//
