LOCUS       NZ_OW970379             4052 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 101 plasmid P5, complete sequence.
ACCESSION   NZ_OW970379
VERSION     NZ_OW970379.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082336
            Assembly: GCF_903993065.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993065.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:54:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,629
            CDSs (total)                      :: 5,509
            Genes (coding)                    :: 5,370
            CDSs (with protein)               :: 5,370
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 54 of 139
            Pseudo Genes (incomplete)         :: 83 of 139
            Pseudo Genes (internal stop)      :: 24 of 139
            Pseudo Genes (multiple problems)  :: 17 of 139
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970379.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="101"
                     /isolation_source="Hospital Universitario Valencia Tres
                     cruces (Valencia)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P5"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            join(3823..4052,1..229)
                     /locus_tag="LQV21_RS28005"
     CDS             join(3823..4052,1..229)
                     /locus_tag="LQV21_RS28005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(737..949)
                     /locus_tag="LQV21_RS28010"
                     /old_locus_tag="AI3007V1_5320"
     CDS             complement(737..949)
                     /locus_tag="LQV21_RS28010"
                     /old_locus_tag="AI3007V1_5320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(953..1438)
                     /locus_tag="LQV21_RS28015"
                     /old_locus_tag="AI3007V1_5321"
     CDS             complement(953..1438)
                     /locus_tag="LQV21_RS28015"
                     /old_locus_tag="AI3007V1_5321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1476..2153)
                     /locus_tag="LQV21_RS28215"
                     /pseudo=""
     CDS             complement(<1476..2153)
                     /locus_tag="LQV21_RS28215"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2116..2457)
                     /locus_tag="LQV21_RS28025"
                     /old_locus_tag="AI3007V1_5322"
     CDS             complement(2116..2457)
                     /locus_tag="LQV21_RS28025"
                     /old_locus_tag="AI3007V1_5322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_057172823.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQSCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(2545..2724)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          2701..3187
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.235"
                     /coverage="93.0"
                     /evalue="5.96e-162"
     Typing          complement(622..2126)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.223"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgaattaaaa gcattgagcg gaataaaatt tgatcaccaa gccggaactg ttttgataaa
       61 tggatctcaa gtacaagcgt caattttagt cactggtgga ggtcaacatg ctactggaaa
      121 aacgatcata caaggtgata cgacaatgac tagccagggt acaagtataa aaatgtcagg
      181 tggtgctcaa atagtaatga ctggtggagc ccgaatcatt cagaactaat atgatttacc
      241 ataacatctc ttgcccgcac cgctccggac atgttcgtca caaacggggc ggcagtcagg
      301 taaaaccggc aacaaaccac ccgatacacc gccccgttcg tgacagataa attttacccg
      361 gctgcatggt catgcagcca gatgcatacg gtctgatttc aggccagaat ctggatgaac
      421 gccttaaaaa caggaaaatg cttctccagc cagtcccaga tctccagcgc catgtacagg
      481 cagttcagca ccgtctcaat cacgttaaac agtctcataa tccctccgtt gtatacgccg
      541 tgatgttttc atcacgaccg tatttagcgg gaaatttatg agcccttctt cgtggggttt
      601 gtcactggtg aagcctgtca gcccagcgtc ggaccgttat agctccgctg acgggaacgg
      661 gcttccgcca gctctttttc gtgctgtcgc tgctcgtatg cccgttcggc ggccaccgcc
      721 atttcatgcc gctgcactac tggctcaaac gctgtaactg cctgctcaag ttcgccacct
      781 gctgactcaa gcgcgtgacg cgctcgttca gcgccgcgtt ctcccgttgc ataagaccag
      841 acatcttctg ccattccgcg aaggcgctct cccactcgtc cagcctttgc gagtagtcct
      901 gatgtagctg ctctaatgcg gtcagcaact gtttttccag ttccgtcatg ggctatttcc
      961 tctccagtac catccagttc ccttcctccc cgtaagctcc cgctttcggg ttcactttga
     1021 cgcaggacag tttcttctcc ccgcagagcg acagctgaac gccgtggttt ttctccgaca
     1081 acatggcctg cgtccgctcc tgcgcccgga tagtctggta attcccggtg atctgctgcc
     1141 cctgccacca cagaatgctc ccgctcatgg cgatcagcag taccgagacc agggtgatgg
     1201 tcagccacgt ccggccgacc atacgcagca cgctcaggcg gttcgactgc atcgccgcgg
     1261 tcataccctg ctcgtgggcg ctgatggcgt cgctgattct cttcgcgctt gcgctcagtt
     1321 ccgcttttac agatttctcg tgctcgctga atgcggcttt cagcatctcg ccggtactct
     1381 gctgctgcgc tttcgattgc tgctccaagt ccttcgccag cgctaaaaga ctgctcataa
     1441 atggctccct tcagtcggat gtttcgcccc ccgtccgggt cggcaatgct gatactgttt
     1501 tttgtagtgc ggaccacctc aaaacctgcc gctgtgagcg cacctgtgac gtcctcgcga
     1561 gttttgagct ccccggatga ggctaaggcc agcaacccac gtgtaatcgc ctgagcggct
     1621 tccagcttcg tttccggcag tgcggacggc gtaaccagta accgccggtt ctccggggcg
     1681 tttggatcat gcagtcccag tctgccgttc accacggtct gccaggcatc gatgcgcggc
     1741 cggtcggcgc gatcgtaata cggctgcagg cgtttcccgg tcagcagttc agtgttgggg
     1801 atcaggaaat tcagctccag ccgccccttg tcggtgtgct ccacccacag aatgctgtac
     1861 tggtctttat cgagcccggg catcagaacc cgctcaaagc tggccatgat ctgctcccgc
     1921 tgcccgggca gcagttcagc ctccgcgaac gacagcacgc cggaggtgta ctttttcgca
     1981 tacggcgagg catcgataag ctcccggact tcctccggtt ttccctgcag cacggtcgcc
     2041 ccctcgcgct gccggtcttt tcccagcagg taatccaccg gaccggcacc accaccgcgc
     2101 ccccggggat gaaatttaac gatcatcatc cccccctttt tccagcaccg catgccgcag
     2161 ccgctccagt cccgcgtcta ttgccatcag ggcggccaca atctgcaccc gatcatgacc
     2221 ggcaccaacg gcattcactt tccgggcgat ctggttcagg ttgttaccca taccggcaag
     2281 ctggcgcagc agcgccggcg atattgacgg cagtctgcag gcacgcgccg gcttctcatc
     2341 gaggcaggac tgacgcatcc acgccgccag ctgcctgccg tcgcaccgct cgagcagccg
     2401 ccggtgttcg tcttccgtca cccacatcgt gagcatcttg ttgcgtttgt ctgccagagt
     2461 agcctcctga taacaccggg acgggcggga aatgtttccc ggtcggcacg gtgttggaca
     2521 agccgcaggc gcgtcagtgg cttttagcgg gtttcggggc gcagccctga accagtcacg
     2581 tagcgctagc ggagtgtata ctggctaaat atgttacggc ggagtggtaa tgtatgaaag
     2641 tgcttcatgt gggaagggga aaatgtggct gacgggcgta agtgcaacat gctggtaaag
     2701 gtgaaatgac gcctcctcgc tcactcagtc gctgcgctcc tgccgtgaga ctgcggcggg
     2761 cgttaccagc tcacagatga cgggatacgc aagcagcgct caaatcagga gaagccggga
     2821 agaggatgcg gcgttgccgt ttttccatag gctccgcccc cctgacgagt atcataaaat
     2881 ctgacgctca aatcagtggt ggcgaaaccc gacaggacta taaagatccc aggcgtttcc
     2941 ccctggtagc tccctcgtgc gctctcctgt tcctgccatt cggtttaccg gtgtcattcc
     3001 gctgttatgg ccgcgtttgt ctcattccac gcctgacact cagttccggg taggcagttc
     3061 gctccaagct ggactgtatg cacgatcccc ccgttcagtc cgactaccac gctcttttcg
     3121 gtaactatcg tcttgagtcc aacccgaaaa ggcacgacaa atcgccattg gcagtagcca
     3181 ctggtaaaca ggatgtgcga gagatgtatt cagagttctt gaagtggtgg ccttactgcg
     3241 gctacactgg aaggacagct ttggtgacat gtctcgcaca agactgttac cacggttagt
     3301 aaatctgcca ggattaacta accttcgaaa aaccacctgc cagggtggtt ttttcgttta
     3361 cagagcaaaa gactacgctc agaaagagat tatctcaaga agatcatctc tttctcttac
     3421 tcaagtcaaa gcaaaaaaac accactccat cacaaactca ggttatagtc ggtatgcaac
     3481 taataacact gtaatttctg tgcaaaatcg aggttatgca tatgcaaatc aacatcaact
     3541 gcaagagtat cccaacatct ttcgatgttg tctgctcgaa ttgtgaatgg accggcgtgg
     3601 ctacattaga ttatccggaa aacgtaaaaa ccctatctgt cggaggagaa ataaatttca
     3661 ctcataatga cgagacgcca aaatgtccac aatgtagcgt tggatatata tatggtaaaa
     3721 gtggcactta taaacgtaat agtgcaacta accatatgga cagaatcgga gattataaag
     3781 agtaaataat acgcatcaca gcaatctaac gagggaaata taatgattga aaccacacta
     3841 cttgccgttc tcactggcgc attaagcaat cttacttctg atgcaatcaa aggcatcata
     3901 gggaagttag caagtaaaca tcctgaagtt gaacaacaag cctcactgct tgaaacacca
     3961 ttaccttttg acgaagttga taaattattt tctcagatgc agggggccat tcaggctgca
     4021 gcagccaatg gtgaaattca gctagatgga gc
//
