LOCUS       NZ_OW970364             2674 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P7, complete sequence.
ACCESSION   NZ_OW970364
VERSION     NZ_OW970364.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082335
            Assembly: GCF_903993155.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993155.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 11:15:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,564
            CDSs (total)                      :: 5,442
            Genes (coding)                    :: 5,309
            CDSs (with protein)               :: 5,309
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 49 of 133
            Pseudo Genes (incomplete)         :: 83 of 133
            Pseudo Genes (internal stop)      :: 17 of 133
            Pseudo Genes (multiple problems)  :: 14 of 133
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970364.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P7"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            complement(400..1683)
                     /locus_tag="LQV29_RS27690"
                     /old_locus_tag="AI2775V1_5254"
     CDS             complement(400..1683)
                     /locus_tag="LQV29_RS27690"
                     /old_locus_tag="AI2775V1_5254"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_163495232.1"
                     /translation="MKSQFMHVELYSREEPAKKTINKSKNLNHQSDVRTTTVSGVLSEM
                     KREEGFTSHLESIHAPDVLYGSISDLERSIERYEAEFKTTDKNGKEKKLRKDACILLAG
                     VVSLDRADEEIWEEYKKSSIEYLKNKYGENLKCVVEHTDETNPHFHFYVVGNQKQDLNL
                     LHDGKLAVSKLAKEDKKKLHQTVYTEAMIKFQDDFYTKVSNKFGLSRTGEEPRERYKSR
                     PDYLRFKKRQETALNILSDIEEFEADIKEKARKTGYSKGAKQFQNKTWVIKVGEAIKLL
                     GKEHKAELDQKEKDLEKIKKEKTEIETELNLKKEELSNAYSQRNEASRKNSVYIDKVNA
                     LKKENKLLLPYKDQFDLKLQQEKEPLQAEVKELTSENTNLKNENSELKKENLDFKEFIL
                     GVKNYYGSKFQEWYEEVFNPKTKTKPKF"
                     /name="plasmid recombination protein"
     gene            complement(1927..2526)
                     /locus_tag="LQV29_RS27695"
                     /old_locus_tag="AI2775V1_5255"
     CDS             complement(1927..2526)
                     /locus_tag="LQV29_RS27695"
                     /old_locus_tag="AI2775V1_5255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019704520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_094327210.1"
                     /translation="MAKAKVLIDDTEEAIIKNALDVDDMNEVNINVTRKKKTGFLGTYS
                     IVFHDSVKTLSKMNLKPNAYKIVMYLFGIIEMGNILVNFSQKKIADDLGLQPSNVSRAF
                     KELFEKKVLIKDSEDGHVYLNSNLCTMGVPKNFDQKRMKSLQKSNIETEDFKNQINLFT
                     PTNTTKIKTNDKKVIKKKEKENVLEFPMQNDWVDIE"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 aagtctgatt atgattttca taattttgca ttatgatttt cataatcgaa aattatgatt
       61 ttcataattt tttttttggt aaagtgttga tatataaggc tttaaagggt gcttaagaag
      121 taagaaaata agaaagaaga aaccgtaact tcaactgcct taccgcctcc ccttcgggtc
      181 gttggacaac cgctcaaacc acagaaccag aggttctgca gttttcacgg ttcacggttt
      241 aagtattttt tctttataag ttattgatat ttaaaggtta ctaactgcgt gcaaactact
      301 ttttttggga taaatcccag ctatgacagc taaacgctgt caggccgctt ctggtggtgt
      361 ctcatacacc acataggcgg caaatatgaa aatattcaat taaaatttgg gttttgtttt
      421 tgtttttggg ttgaatactt cctcgtacca ttcctgaaat ttagatccat agtaattttt
      481 aacacccaaa ataaattctt tgaaatctaa attttctttt ttcagttctg aattctcatt
      541 tttcaaattg gtattttcag aagtcaactc tttgacttct gcttgtaatg gctctttttc
      601 ctgctgtaat ttcaaatcaa attgatcttt gtatggaagt aataatttat tttctttttt
      661 tagagcgttt actttatcaa tataaacgct gttttttctc gatgcttcat ttctttgact
      721 atatgcatta gataattctt cttttttcaa attaagctca gtttcaattt ctgttttttc
      781 tttttttatt ttttctaagt ctttttcttt ttgatctaat tctgctttat gctcttttcc
      841 aagtaattta attgcctcac caactttaat tacccatgtt ttattttgaa attgttttgc
      901 acctttacta tatccagttt tccttgcttt ttctttaata tcagcttcaa attcttctat
      961 atcagacaat atatttaatg ctgtttcttg tcttttttta aatctcaagt aatcagggcg
     1021 ggatttatag cgttctcgcg gctcctcgcc cgttctgctc aatccaaatt tattagatac
     1081 ctttgtataa aaatcatctt gaaatttgat catagcttct gtgtagactg tttgatgtaa
     1141 ttttttctta tcttcttttg ctaatttaga tactgcgagc tttccatcat gaagcaaatt
     1201 taaatcttgt ttttgattac cgaccacata aaagtgaaaa tgtgggtttg tttcgtctgt
     1261 atgctcaaca acacatttta aattttcacc atatttattt ttcaaatatt caatagatga
     1321 tttcttgtat tcttcccaaa tttcttcatc tgctcgatct agagaaacca caccagcaag
     1381 caagatgcat gcatctttgc gtagcttctt ctctttgccg tttttatcag tagtcttaaa
     1441 ttcagcctcg taacgctcta tagagcgttc tagatcgctt atagagccat acagcacatc
     1501 aggtgcatgt atgctctcta aatgtgatgt aaaaccttct tcccttttca tttctgacaa
     1561 cacaccggaa acggttgttg ttctaacatc agattgatga tttagatttt tacttttatt
     1621 tattgtcttt tttgctggtt cttctctgct gtagagttct acatgcataa attgtgattt
     1681 cattttcaat tctcctatat tttaatttcc cttatatatg taattaacag ttattgtttt
     1741 tctgtcaata gctataggaa ccgactatat ctattacgct agcatatttc atatgctgct
     1801 ccatagatgc ggccctacgg ggttaaagtc aacttcaaaa caaaaaagca aatccctaaa
     1861 ccttgcaaat tttatatttg cgaggtttag ggattcagca aacgaagtgc ggtagtatta
     1921 gttttactat tcaatatcaa cccaatcatt ttgcattgga aactctaaaa cgttttcttt
     1981 ttcctttttc ttgataactt tcttatcatt ggtttttatt tttgttgtat ttgtaggagt
     2041 aaataaattg atctgatttt taaaatcttc agtttcaata tttgattttt gtaaactttt
     2101 cattctcttt tgatcaaaat ttttcggaac acccatagtg catagatttg aattcaagta
     2161 aacgtgtccg tcttcgctat ctttgattaa aacttttttt tcaaaaagtt ctttgaaagc
     2221 tcttgatacg tttgaaggct gcaaacctaa atcatcagca atctttttct gtgagaagtt
     2281 aactaaaata ttacccatct ctattatgcc aaataagtac attacaatct tatatgcatt
     2341 aggctttaag ttcattttag atagtgtttt cacagagtca tgaaaaacta ttgaataagt
     2401 tcctaaaaac ccagttttct tctttctcgt gacgttaatg tttacttcat tcatatcatc
     2461 aacatctaat gcatttttta ttattgcttc ttctgtatcg tctattaaaa cttttgcttt
     2521 tgccattttt atattccttt ttgtagtaaa aataataatc tatgttgcat ttataaccga
     2581 tctaaatgca atgtcaatat caaaacgata agaaagttat cgtttcaaca tcaaatcata
     2641 tcaatgcacc tgtatgcaaa attatgattt tcat
//
