LOCUS       NZ_OW970363             4167 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Klebsiella pneumoniae isolate 147 plasmid P6, complete sequence.
ACCESSION   NZ_OW970363
VERSION     NZ_OW970363.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7082335
            Assembly: GCF_903993155.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903993155.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 11:15:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,564
            CDSs (total)                      :: 5,442
            Genes (coding)                    :: 5,309
            CDSs (with protein)               :: 5,309
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 49 of 133
            Pseudo Genes (incomplete)         :: 83 of 133
            Pseudo Genes (internal stop)      :: 17 of 133
            Pseudo Genes (multiple problems)  :: 14 of 133
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW970363.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="147"
                     /isolation_source="Hospital Univeristario de Bellvitge
                     (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
     gene            complement(join(3590..4167,1..55))
                     /locus_tag="LQV29_RS27660"
     CDS             complement(join(3590..4167,1..55))
                     /locus_tag="LQV29_RS27660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(55..1170)
                     /locus_tag="LQV29_RS27665"
                     /old_locus_tag="AI2775V1_5251"
     CDS             complement(55..1170)
                     /locus_tag="LQV29_RS27665"
                     /old_locus_tag="AI2775V1_5251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(1515..1628)
                     /locus_tag="LQV29_RS27670"
                     /pseudo=""
     CDS             complement(1515..1628)
                     /locus_tag="LQV29_RS27670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2044..2235
                     /locus_tag="LQV29_RS27675"
                     /old_locus_tag="AI2775V1_5252"
     CDS             2044..2235
                     /locus_tag="LQV29_RS27675"
                     /old_locus_tag="AI2775V1_5252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2235..2636
                     /locus_tag="LQV29_RS27680"
                     /old_locus_tag="AI2775V1_5253"
     CDS             2235..2636
                     /locus_tag="LQV29_RS27680"
                     /old_locus_tag="AI2775V1_5253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2982..3224)
                     /locus_tag="LQV29_RS27685"
     CDS             complement(2982..3224)
                     /locus_tag="LQV29_RS27685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     Typing          complement(1516..1923)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 aatcatcatc accctcaacg aaaatgatct ttttgctatt atttatgtct ttcattatct
       61 tacctcccag tcgttctcaa ctgagtagga gaaatcatcc atattgaatt gtacggctgt
      121 tggttttagg gagttctttt ctcttcctag tctaatataa gcgatatctt catttttgct
      181 atctatttcg tttattgctc gtatcacatc ttgactatga gttgttgcaa atatttgatt
      241 gttgttttgt tttgcagatg aaattaatga ttttattatg tctttaatta ctgagtaatg
      301 tattccgttc tcgatttcat caataagaat aattgagttt tcctgtacca gcactgagct
      361 gataaaagat aatgctcgac tgataccctc gccaagcatt gatatttcat ttagctcact
      421 aaatccaatg tctaaatata tttccttatt gttacctatc gcagatattg ctatatctac
      481 aattctgtca tctatttttt ttaagttttc tagtatgtct tttttccttt tttgtgttag
      541 taggctagat acatttgtaa ttgttgcctc tttgtttatc tttctggatg ttgttattat
      601 tgttgctgtc ttaaatttat aattaatccc atccctttcg ttttttattt cggattttat
      661 ttctacgcca tcttctttca attgcataga gaaaagctta ttggaaaccc tgtttttcgc
      721 attgggtgtc tcggtcacat ttatttttaa agagtttact gtggcctgag aaccgatagt
      781 ttgacgaggt atgttttggt tagatagtac ggtgtcaacg tttagagaca aacttgattc
      841 taatctctga tttgtttctg tttcatatgt ttgtgttact tcagagcgtt catctcgaat
      901 gactatggac atcttttgtg atgtgtccat atcatgaaag taactaaccc aaaatggctt
      961 gtttttgttt atttctgcca tttcttttct gaatgcttga atgtttaaca aaacagccgg
     1021 gttttttaca tcataaaaac aaaaaatagc atccagtata gatgttttcc cgtagttgtt
     1081 tttcccagct atgatattta aagtctttaa ttgctttaga tatagctcat tgaagcattt
     1141 gaagttcttt aaacttattt cctttatcat gatagcctct gttcgtgttt ttgttatatg
     1201 ccatacgatt tgttagtacc ttaataaaat gtacagcttt cattgtgatt agctagactt
     1261 tatgtcaaag attaactttg attgcttgtg ttttaatcga ttttttttac tttcttcttg
     1321 agattatctg gcagcagccg taagcttccg gctgtgaacg aaaaaaaccg ccttggcggg
     1381 cggttttttc gaaaggttca gtagagttgg cgctctatga accgaggtaa ctggcttaaa
     1441 gggagcgcag tcaccaaaac tgttcgttta gtttagcttt aactggcgta taacttcaag
     1501 actaactccc taaatcagtt accagtggct gctgccagtg gcgctttgtc gtgtctttcc
     1561 gggttggact caagacgata gttaccggat taggcgcagc agtcggactg aacggggggt
     1621 tcgtgcatac agtccagctt ggagcgaact gcctacccgg aactgagtgt caggcgtgga
     1681 atgagacaaa cgcggccata acagcggaat gacaccggta aaccgaaagg caggaacagg
     1741 agagcgcacg agggagccat cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt
     1801 tcgccaccac tgatttgagc gtcagattcc gtgatgctcg tcaggggggc ggagcctatg
     1861 gaaaaacggc cgctgtgcgg cctttccttc tttcctccat gcgattactc ggttttctcg
     1921 agcgtttcta cgcatgctcc tgccgctcgc cgcagccgaa cggcaggagc gtagcgactg
     1981 agtgagcgag gaagcggaaa agaggagatc cctacactga ccactgacgc tctgaggcct
     2041 cttatgacga aacaacagaa aacagcgctg aacatggcta aattcatcca gaatcagtct
     2101 ctgctcctgc tggagaagct taacgagctt gatctcgatg tcgaggccga cctttgtgag
     2161 aaactccacg atgatgcgga gcatcttttc cgtacactgt cctcgagact ggatgcatta
     2221 caggatggta actgatggcc agagtgtcta ttagtgaggc tgcccgactg acgggtaaga
     2281 gtagaacaac actgcacagg ttaattaaag caggtgacct gtccacctgt agcggtgagc
     2341 gcaatgcaaa aatggtagat acttcagagc ttttacgtgt ctttggcccc tttgagcaac
     2401 cgaagggtga acaccattct ggacaggtct ctggacagcg tgatacagcc tctgctgacc
     2461 agagtgaaca ggtgatccgt catctgaaac aggagattga acacctgaac accttacttt
     2521 tgtccaagga ttcgcacatt gacagcctga aacaggccat gctccttctt gaaaatcacc
     2581 aggcaaaatt aactgaatcc ccggcgccat ggtggaaatt ctggaaaaaa tcctgacccc
     2641 gtcatgcttc agttttcctc tccggccatc ccagggagtt cctgaacctt cccaaaaatc
     2701 gtcagatctc tgaacgctcc tcaccactaa aaatacccac accccacgca aaattaaaat
     2761 tttgcagatt ccttatttac aacaatgggt taatgaaaaa taaatgtgcg gtgatgtgtt
     2821 acaaagtgca gatccaagtc gtggacgact ctatggcgaa tcgctgacga attgcccacg
     2881 attcatatgt gaatcacgct ttattatcat attgttatga tgaatcgact cttgattcaa
     2941 ttcatcactt tgggtgtttt ttgctcatgg tgactcttga ttcaattcac gattcgaatc
     3001 gccggtgaat cgtgtggtga gtcgtccggc gacttgccat aacgtgattg ccggccgtcg
     3061 acgaacccga ttcctgaagg tgctgaaaac cggttttccg gctgcgccgg caacgcttca
     3121 cggccacgca ataaattgcg tccccgttca ccgttttcgg aggagaagaa cgccggaaac
     3181 aggacttccc ctggctgaat ggtgtgaatt tccgcgctat gcacttgcgc gcatactcat
     3241 gcatgccgta aaaacagagc ctgcgcgttt ctggcgggtt ttcgggtggt ttgttgcctg
     3301 ttttaccggt ttcccgtcag aaacgtcctg agtccgtttt agcggtgcgt acaattatga
     3361 ttttatgtta aattgtttta agtgaataga gagaatataa cttaagggag catcttgtgc
     3421 tgggtctttt acattagatc tgcacaatca ttgttttggc atctggtgat gtctttagga
     3481 cgtttgagat tgctgataac taaagtgtat gatgctttct atacgttatc cggcgtttaa
     3541 taacaccctg gtgataagcc agcccgtgaa gggctggctt gatttggatt tatatttttg
     3601 aaataaaatc ttttatttca tcaaagcaat tgtctgctgt gtttattatt ccatttttca
     3661 tggatattcc tattcttgag tcggattctc tattgcagct aagatagact tgtaccttag
     3721 cttttttttc gtttgttgga taagtgtact ctttgtcact cgctgagatg tcatctttat
     3781 tatttttaat tttttcgaaa aattctatta tgtattcata taacgctcga gtgcttgcgt
     3841 gttcaattat cagatcttca atggcacctt gcttgtcttt tcctggcatt ataaagaaag
     3901 aaatttttgt attgccattc atagctatct cgttatgcga gctgggggag gagatttgta
     3961 gttctcgcaa tgtggcaatt attgatcttt ctgtgtcaga aaatgatgtg tcagcatcta
     4021 atataataaa aatactttct ttttcatcga aagaatcaat gtttttgaat gctctaagtg
     4081 cttgttttaa ttttgatttt ccatttattt tttcgacaaa aacatcggta atgccttgta
     4141 tttcaagtag gttgcataga aaatgaa
//
