LOCUS       NZ_OW969665             2495 bp    DNA     circular CON 04-JUN-2024
DEFINITION  Klebsiella oxytoca isolate 36 plasmid P6, complete sequence.
ACCESSION   NZ_OW969665
VERSION     NZ_OW969665.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8158457
            Assembly: GCF_905333885.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905333885.2-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 06:28:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,885
            CDSs (total)                      :: 5,767
            Genes (coding)                    :: 5,640
            CDSs (with protein)               :: 5,640
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 50 of 127
            Pseudo Genes (incomplete)         :: 88 of 127
            Pseudo Genes (internal stop)      :: 24 of 127
            Pseudo Genes (multiple problems)  :: 30 of 127
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW969665.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /isolate="36"
                     /isolation_source="Hospital Universitario La Princesa
                     (Madrid)"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            join(2390..2495,1..80)
                     /locus_tag="LQ206_RS29375"
     CDS             join(2390..2495,1..80)
                     /locus_tag="LQ206_RS29375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(371..562)
                     /locus_tag="LQ206_RS29380"
                     /old_locus_tag="AI2918V1_5730"
     CDS             complement(371..562)
                     /locus_tag="LQ206_RS29380"
                     /old_locus_tag="AI2918V1_5730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021243041.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQILSETEPAV
                     RTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            1797..2024
                     /locus_tag="LQ206_RS29385"
                     /old_locus_tag="AI2918V1_5731"
     CDS             1797..2024
                     /locus_tag="LQ206_RS29385"
                     /old_locus_tag="AI2918V1_5731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          complement(128..215)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          854..1382
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 gctgctgtga gcacctgcac gatcaggccg aagcgcttta cgccatgctg aacgcacaga
       61 taggcgagga aaatgcgtga aaatcggtga acgggtgcgc aattcagtgc gcggccgtga
      121 ggcgatggcg gggtgtcggg gcgcagccct gaccagggta tttgtgatgc cggcgcgtgc
      181 gcggtattac aaatgcacat cctgtcccgg aacggacacc gggaaacagc aaaaaaaacc
      241 gggcggcacg cccggaactc aatcaagtta gattagatta ctctcactcg tccataacag
      301 catcatggaa cgacgaccac cgtccgtgac ggccgcctcg tttaagtatg gacagaaata
      361 cagaaaatgc tcaggacgaa atgtaatgaa tgcgaacgga ttcaagaaat tcgagcatga
      421 cagtccttac ggccggttcg gtttcagaca aaatctgccg gtatgcatcc agcatcatgg
      481 ctccggcatc ccctccggca cgccgtagcc agaccgaaac aacggacaca agcaggtgtc
      541 gctcatcatc actaagagtc atcagggctc cggaagaaaa accaaacatg gcttacctac
      601 tgttaacggc aacgcagaag aaaggtttac agggtagcgg gcagggatga aaaaaaaaaa
      661 attgcagtca ggccggaacg gctgctgaac cggtacaggc gggttccggg cgcagcgccg
      721 gaccagtcac ggagcactag cggagtgtat actggcttaa gatgtagcat ggcagtaaca
      781 catagcatta atgccacata agacaggcgc agaaagtgaa agaaaacgcg tcaggagaaa
      841 atgtgataca gaatatattc cgcttcctcg ctcactgact cgctccgctc ggtcgttcgg
      901 ctgcggcgag cgggacgggc ttacggatgg atcagaaatt tcctggggga tgccaggaag
      961 atacttaacg aagaaagcat aaggccgcgc caaagccgtt tttccatagg ctccgccccc
     1021 ctgacaagca tcacagaatc tgacgctcaa atcagtggtg gcgaaacccg atgcggctta
     1081 aagataccag gcgtttcccc ctggtggctc cctcgtgctc ccccgcattc ctgcctttcg
     1141 gtttaccggt gtcactccgc tgttatggcc gcggtttctc attccacgcc tgacactcag
     1201 ttccgggaag gcagttcgct ccaggatgga ctgtatgcac gaaccccccg ttcagtccga
     1261 ccgctgcgcc ttatccggta actatcaact tgagtccaac ccggaaagac acgactaatc
     1321 gccattggca acggccattg gcaaacagga tgtgcgagag atgtctcaag agttcttgaa
     1381 gtggcggcct tagtgaggct acactgaaag gacaaatttg gtgacatgtc tcgcacaaga
     1441 ctgttaccac ggttagggga tctgccagga ttacctaacc ttcgaaaaac cacctgccag
     1501 ggtggttttt tcgtttacag ggcaagagat tacgcgcgga aaaaaaggat ctcaagaaga
     1561 tcctttataa attagacatc caacctcaca aagaggaata cttaaatcat cttggtatat
     1621 gtatcggccg gattacatct catataagcc tcctccccgc ctgacaccac actttgacca
     1681 tagcacctcg cgcctaactc gatatacagc ccaccatcaa gcctcttttc acataaaaaa
     1741 tgacctatag ttagatggtt agtgaccaaa actgatatgg ataaaaggag ctggctttga
     1801 aaaagatttt tgtttcagtg ttcgcagcgg cagttgcgct ttcagccctc accggctgca
     1861 cgcgcacaag ctatgccata cacaccaatg acggtcgcac tattgtcagc gacggcaaac
     1921 ctaaagaatc agactcaggc ctgcttggct atacagacgc gaatggtgtc aaacagcaga
     1981 tcaataaaac cgacgttaaa gaagtctccg aaattccgca ctgagcatct tctccgaaaa
     2041 aggccgctaa tgtggccttt ttctttacct gtggttctcc gccaaaatcc cagcaaattg
     2101 catcaccaaa gctaaaagct ttcagggttg tctaaaaagc acaagacata agaggaagtg
     2161 cggtatttta taatcaagcc cccaagaatt taccataaca tccgttgccc gcaccgcctg
     2221 agacgcgttc agcgcgttcc tgacgaaacc atgacaaaaa ccacaacaaa ccaccccgga
     2281 acccgtcaga aacgcgcctg ttaaatttta acggcatgca tgactatgca ccagaatgac
     2341 gccatgctct tttcacgcaa aaatcatcac cagacgggga aaatcaccag tgaccagaca
     2401 ggaatccgcc gccctcaata tggccaaatt tatccgcgca cagacacttc tcctccttga
     2461 gcggctcgag cagatggatc tggatgaggc tgccg
//
