LOCUS       NZ_OW969664             6396 bp    DNA     circular CON 04-JUN-2024
DEFINITION  Klebsiella oxytoca isolate 36 plasmid P5, complete sequence.
ACCESSION   NZ_OW969664
VERSION     NZ_OW969664.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8158457
            Assembly: GCF_905333885.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905333885.2-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 06:28:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,885
            CDSs (total)                      :: 5,767
            Genes (coding)                    :: 5,640
            CDSs (with protein)               :: 5,640
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 50 of 127
            Pseudo Genes (incomplete)         :: 88 of 127
            Pseudo Genes (internal stop)      :: 24 of 127
            Pseudo Genes (multiple problems)  :: 30 of 127
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW969664.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6396
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /isolate="36"
                     /isolation_source="Hospital Universitario La Princesa
                     (Madrid)"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="P5"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            complement(75..443)
                     /locus_tag="LQ206_RS29330"
                     /old_locus_tag="AI2918V1_5722"
     CDS             complement(75..443)
                     /locus_tag="LQ206_RS29330"
                     /old_locus_tag="AI2918V1_5722"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_073545627.1"
                     /translation="MKTTSEFARDAQKWDDRELGASEDHVEVASMAEMAAFNDALSLQA
                     ISIRLQKNLVSDLKSIAESYGIGYQPMVRDLLQRFVIAEKKQALRRQLDRLNEQEQIHQ
                     QEDTVPVDEFIESIRKQA"
                     /name="hypothetical protein"
     gene            complement(634..927)
                     /locus_tag="LQ206_RS29335"
                     /old_locus_tag="AI2918V1_5723"
     CDS             complement(634..927)
                     /locus_tag="LQ206_RS29335"
                     /old_locus_tag="AI2918V1_5723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012535809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosyl-(dinitrogen reductase) hydrolase"
                     /protein_id="WP_080463864.1"
                     /translation="MTIVISKEIEEKLRTKHQVTNKEVYECLANCKGNLLIDNREQHRT
                     NPPTNWIIAETNRRRELKVCFMIIDGDIHIKSAFEPNEKEQKIYAQHGKKTT"
                     /name="ADP-ribosyl-(dinitrogen reductase) hydrolase"
     gene            1409..1669
                     /locus_tag="LQ206_RS29340"
                     /old_locus_tag="AI2918V1_5724"
     CDS             1409..1669
                     /locus_tag="LQ206_RS29340"
                     /old_locus_tag="AI2918V1_5724"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_094955575.1"
                     /translation="MSTVTRVLTNPVGMARLVTNYSRIKEMESNGLSVEKIAKIFDENA
                     VELQNFVTVADGFVSGEKSLSLDVTNKSKDAFNAVAGALAK"
                     /name="hypothetical protein"
     gene            complement(2199..2311)
                     /locus_tag="LQ206_RS29345"
                     /pseudo=""
     CDS             complement(2199..2311)
                     /locus_tag="LQ206_RS29345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2727..2918
                     /locus_tag="LQ206_RS29350"
                     /old_locus_tag="AI2918V1_5726"
     CDS             2727..2918
                     /locus_tag="LQ206_RS29350"
                     /old_locus_tag="AI2918V1_5726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2918..3340
                     /locus_tag="LQ206_RS29355"
                     /old_locus_tag="AI2918V1_5727"
     CDS             2918..3340
                     /locus_tag="LQ206_RS29355"
                     /old_locus_tag="AI2918V1_5727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_094955578.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVTYDVKSDAESTGVNSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEYKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(4183..4348)
                     /locus_tag="LQ206_RS29360"
                     /pseudo=""
     CDS             complement(4183..4348)
                     /locus_tag="LQ206_RS29360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009092571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /name="DUF1471 domain-containing protein"
     gene            4476..5003
                     /locus_tag="LQ206_RS29365"
                     /old_locus_tag="AI2918V1_5728"
     CDS             4476..5003
                     /locus_tag="LQ206_RS29365"
                     /old_locus_tag="AI2918V1_5728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005200081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_094955577.1"
                     /translation="MASTNCITVLTARGIQEILKTGGSQAWRLDASHAAKHQYLVCVQN
                     SKKDWGSQEAKHHHAFMVGQISGVSRAPEHSKRWIINIDSYAEIDIPDQWDGNRNPVSY
                     RNLESMGIDVTRLDFKPVSKVTSSVLNDVKTVDEREENKVFSNPLNIKDAKAGLALYFG
                     VSEDDIQITING"
                     /name="hypothetical protein"
     gene            5535..6050
                     /locus_tag="LQ206_RS29370"
                     /old_locus_tag="AI2918V1_5729"
     CDS             5535..6050
                     /locus_tag="LQ206_RS29370"
                     /old_locus_tag="AI2918V1_5729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008321407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_094955576.1"
                     /translation="MQKVTDLYPPEIAGHKLQDHFAGNTVMLELIQKLNKTSLCTFAAL
                     CDGNVVTTSGYNITADLCVNRASAVAHSLKKKYLPVTARTISTKADVGGAVKQAAFCID
                     ESDLARLKSEPEKMMKECERNLDSQKRTNAQKEISRLYKEFGEDGILALLSNVARSNGT
                     PPGAQPAS"
                     /name="hypothetical protein"
     Typing          complement(2200..2606)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.844"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tcctggctta aggctcatcg ttgttctcct ttgaaatata taagaaattt ctttatcggg
       61 atgatgtatg tcatttacgc ttgttttcta atactttcaa tgaactcatc tacaggcact
      121 gtgtcctctt gttgatggat ctgttcttgt tcatttaacc tatctaattg tctgcgtaat
      181 gcctgttttt tttctgcaat aacaaaacgt tgcagaaggt ctctaaccat tggttgataa
      241 cctattccat agctttcggc tattgatttt aaatcactta caagattttt ttgtaatcta
      301 attgagatag cttgcagtga taatgcatca ttaaaagctg ccatttcagc catggatgca
      361 acttctacgt ggtcctctga ggcgccgagt tctcgatcat cccatttctg tgcgtcacgt
      421 gcgaattcac tggtagtttt cattaggtag acctctagtg ctgtttcctg tagatcagga
      481 ttagcttcaa ttttctatgc ttcgtttgtt ccgtaaggaa cctctatgtt aagaattcaa
      541 tttggctttt ttaaatatta attattagcc tatgtaagat ttttgaaagg tcttacagtg
      601 taaaaccttt caaaacaatt acttattttt tttctatgtg gtcttttttc catgctgagc
      661 atagattttt tgttcttttt cattcggttc gaaggctgac ttgatatgaa tatcgccatc
      721 gataatcatg aaacacactt ttagctctct acgccggttg gtctcagcga tgatccagtt
      781 agttggtggg ttcgttcgat gttgttccct gttatctatt aacaagttac ccttacaatt
      841 agcgaggcat tcatacactt ctttattcgt tacttgatgt ttagttctta gtttttcttc
      901 gatttcttta cttattacaa ttgtcatgtt gcatggcgcc tcggcattcg ttgtgaaatt
      961 gaacttattg tatatacaaa acttacatta gtcaatgcct ggccagcttt atcgctattt
     1021 ttggctgctt atgtgtatat acagcatgtg tttttcaact gacttaatcc ctttgggatg
     1081 tatgggctca gtttggaaat cgtaagttac tgtacattta ggttattatt tgaccagatg
     1141 agatgcgtaa cggattgatt tttcgtcagc ggctaccgct atcgcattta ggttatccga
     1201 ttaaggtcaa gtcccctgag aactccgtat agcgcaggag tacactctat tgctatatcg
     1261 aaacttcccc acgggaagga aatcgtcgag gggatatacc aaaaaaggct agcagatctg
     1321 gagtcccccc cccttgaaat tgaataaaac atcctcatat ggaaagggtc tttcactggt
     1381 ctcccagttc atataaggaa cttaaaacat gagtacagta acccgtgttc tgactaaccc
     1441 cgtaggcatg gccagacttg tcactaatta ttctcggatc aaagaaatgg agtctaacgg
     1501 tcttagcgtc gaaaaaattg ctaaaatttt tgacgaaaac gccgtcgaac tccagaattt
     1561 cgtaaccgtc gctgatggtt ttgtttccgg tgaaaagtct ctttctctgg atgtaacaaa
     1621 caagagtaaa gatgctttta acgctgtggc cggtgcctta gcaaaataaa acggataaac
     1681 taaagcccgc gctaagcggg ctttttcata gtcaggaacg acgcgccagc tcacgacgcg
     1741 catcacagac agaacaataa accgcccgac attgggttct gaacgcgttt acctacattg
     1801 gttaaataac gccctaaacg tacaataatt tccgatctcc aaactccccc ctgtatgggg
     1861 gctctggcca atagatatca acaaagatta cgaaaagagc tcggtcatcc tgagtaaact
     1921 aaggtggggt actttttgtc cgtcgttgac attcatctac ggtcgaattt gtcaggggga
     1981 tggtaaacca aaggatcttc ttgagatcct tttcaatgag tcgtaatctc ttgctctgta
     2041 aacgaaaaaa ccacccggca aggtggtttt ttcgaaggtt cattaaccgg caagtttctg
     2101 aaccgaggta actggcttat tagaggagca cagtcaccaa aactgttcgt ttagtttagc
     2161 cttaaccggc gcataacttc aagactaact cctctaaatc agttaccagt ggctgctgcc
     2221 agtggcgctt ttgcgtgtct tccgggttgg actcaagacg atagttaccg gataaggcgc
     2281 agcagtcgga ctgaacgggg ggttcgtgca tacagtccag cttggagcga actgccttcc
     2341 cggaactgag tgtcaggcgt ggaatgagat aaacgcggcc ataacagcgg aatgacaccg
     2401 gtaaaccgaa aggcaggaac aggagagcgc acgagggagc catcaggggg aaacgcctgg
     2461 tatctttata gtcctgtcgg gtttcgccac cactgatttg agtgtcagtt tctgtgatgc
     2521 ttgtcagggg ggcgaagcct atggaaaaac ggccgccgtg cggcctttcc ttttccccgt
     2581 cacgcgaccg ctcggttttc tcgagctatt atacgcatgc tcctgccgct cgccgcagtc
     2641 gaacggcagg agcgtagcga ctgagtgagc gaggaagcgg aaaagagaac atccctacat
     2701 tgagcactga cgctctgagg cttcttatga cgaaacaaca gaaaacagcg ctgaacatgg
     2761 ctaaattcat ccagaatcag tctctgctcc tgctggagaa gcttaacgag cttgatcttg
     2821 atgtcgaggc cgacctttgt gagaaactcc acgatgatgc ggagcatctt ttccgtacac
     2881 tgtcctcgag actggatgca ttacaggatg gtaactgatg gccagagtgt ctattagtga
     2941 agcggcacgg cttgttaagg ttagtcgccc cacaatttac aagatgatta acagtgggaa
     3001 gttaagttac acctctgttg taaagcacgg gaaggctatt aaagttattg atacctcaga
     3061 gcttattaga gtgtttggtt ctcttgatgg tgtcatcgat actgtaacat atgatgtaaa
     3121 aagtgacgca gaatctacag gtgttaacag cgttggttta catgatttac aacatagaat
     3181 tgctttacta gaagctgaaa acgatggtct taaaggggct gttaaggctc gagatgagca
     3241 tattgattcc cttcgtcagg ctatgcagct tctggagtac aagcacgaac cttcttcacc
     3301 accccattcc ccctggtgga aattctggaa aaaatcctga ccccgtcatg cttcagtttt
     3361 cctctccggc catcccgggg agttcctgaa ccttcccaaa aatcgccaga tctctgaacg
     3421 ctcctcacga ctaaaaatac ccacacacta cgcaaaatta aaattttgca gatttgtatt
     3481 taatatcagt tgtttacttt cgtgaaattt cgttttttaa attttattta catagatccg
     3541 actctatgac gactcgtcat agagtccccg gcgagtcgtc atagagtcgg taacgactca
     3601 ggactataaa aacaatgagt taataacgac ccgactctag acccgactcc ccgtttggtt
     3661 gttttttaga cgcggcgact ctgggtacga ctctagtgaa gagtcgccgg tgaatcgtgt
     3721 ggtgagtcgt ccggcgactt gccataacgt gattgccggc cgtcgacgaa cacgattcct
     3781 gaacgtgctg aaaaccggtt ttccggctgc gccggcaacg cttcacggcc acgcaataaa
     3841 ttgcgtcccc gttcaccgtt ttcggatgga aagaacgccg gaaacaggac ttaccctggc
     3901 tgaatggcgt gagttttcgc gctatgcact tgcgtgcata cgcatgcatg ccgtaaaaac
     3961 agagcctgcg cgtttctggc gggttttcgg gtggtttgtt gcctgtttta ccggtttccc
     4021 gtcagaaacg ccctgaggcc gttctgacgg tgcgtacaat taaggcttta tgttaaatga
     4081 cagatgcaaa aaagcccccg aaggggcctg aaggttttcc cgctgagggg cgaaccgggc
     4141 cggctcccgg cgacctgttc ggcagctccc tctgcgacca tcttatttgg tcagctctgc
     4201 ggtcatgtga acgccgttgt taaagttgga ttcagtaatt ttgtaagacg taccggcttt
     4261 ttttagcctg agcggcgatc tggacctctg ctccgtcaat ggtggatgca caggcggtga
     4321 cgctctgagt aaatgcaccg aaagatatcg taaatactaa atcaagtact aatcagtact
     4381 tgatttagta ttttgtttat tatgtcggta gttgtgtgtt ataactatct tttacgtagt
     4441 tttttggttt tttttttgat taaaggtggt tataaatggc aagtactaac tgtattactg
     4501 ttcttacagc tcggggtatt caagagatat tgaaaacagg aggaagtcag gcttggaggc
     4561 ttgatgccag ccatgcagca aagcatcagt atttggtttg tgttcaaaac tcgaaaaagg
     4621 attggggttc tcaggaagca aagcatcacc atgcgtttat ggtcggtcaa atatcaggag
     4681 taagcagagc cccagaacac tccaagcgtt ggattataaa tatcgattct tatgctgaaa
     4741 ttgatatccc agatcaatgg gatggtaacc gaaatccagt ttcttatcga aacctcgaaa
     4801 gtatggggat tgacgtcact agactggact ttaagcctgt ttcaaaagta acttcatctg
     4861 ttttgaatga cgtaaagacc gttgatgaaa gagaagagaa taaagttttt tctaatccat
     4921 tgaatattaa ggatgcaaag gcgggtttgg ctctatattt tggcgtcagt gaggatgaca
     4981 ttcagatcac gattaacggg tgacatcata aaaccgatga cgcttggcat catagttctg
     5041 acatcggatg tgatggtaaa tagcaagatt atgagttatt cagttggctg tttttacgtc
     5101 aacttttttg ctgtatgttt aaacatgctt ttaacattgg taccacttgg tagtgttgtt
     5161 gctaatttaa gctaccagac agataatttc cttgtaaatc aagcatgaaa gatcagaaaa
     5221 aaaactatgt tcgcacttat ggaatagggt agaataaggg attctgatga tcgtgaggtt
     5281 gtcagtaaaa acgaggcagc tatcagatct tcggcctgag aaactaagga ttctgatagc
     5341 tgccggtgac gcagttcgag aaaactgaat cttacctgat caacaaacgc ccgattaggg
     5401 cgtttgtcaa gtggtgctgc attatgtagt aacttggtac tgacttgcca ggcatttttc
     5461 atagtttttt gatgtgcgaa ggctcatcag gacaccgtca cctgttattt atcctcctta
     5521 aacaggtgct ataaatgcaa aaagtgaccg atctttatcc ccctgaaatt gctggccata
     5581 aactccagga tcacttcgcc ggcaataccg taatgctgga gttaatccag aaactaaata
     5641 aaaccagcct gtgtactttt gcagcgctct gtgacggtaa tgtggtgacc acttctggct
     5701 ataacattac ggctgatctg tgtgttaacc gtgcgtcagc cgtggctcat tcgcttaaga
     5761 aaaaatatct gccggttacg gccagaacga tttcgactaa ggctgatgta ggtggtgcgg
     5821 taaagcaggc cgctttctgt attgatgaaa gcgatcttgc aagacttaaa tcagagccgg
     5881 aaaagatgat gaaagagtgt gagcgtaact tggacagcca gaagcgtacc aatgctcaga
     5941 aagaaattag taggttgtat aaagagtttg gtgaagacgg catactggcg ctgttaagca
     6001 atgttgcccg atcgaacggt acgccgccag gcgcacaacc tgcaagctaa taatcttgca
     6061 ggtcatcgtg aagtaaccgg cctaagcccg caaagcgggc ttttttatgt gcgatgcagc
     6121 atagttgtta tggtagctct ctcgaagact tccatttgaa gaaggtgtag tttcctgttt
     6181 gggaattcga gcttgggcgg ctgcaatgat acgatcagtg ggaggatgat aaatttaggc
     6241 gttgattgat aaaataaaag cccctaaggg ctttgagtta ctgacttatt tccctgagga
     6301 tttactgggt ttcagtttat cagtgttccc cggtgttttt ttattgtcgc gctggcgttt
     6361 atcaggttcc cctgttgatt cggcaattcg tttcgg
//
