LOCUS       NZ_OW967974             1459 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Escherichia coli isolate 648 plasmid P8, complete sequence.
ACCESSION   NZ_OW967974
VERSION     NZ_OW967974.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065716
            Assembly: GCF_905330275.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905330275.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 11:25:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,224
            CDSs (total)                      :: 5,108
            Genes (coding)                    :: 4,875
            CDSs (with protein)               :: 4,875
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 71 of 233
            Pseudo Genes (incomplete)         :: 168 of 233
            Pseudo Genes (internal stop)      :: 39 of 233
            Pseudo Genes (multiple problems)  :: 40 of 233
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW967974.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="648"
                     /isolation_source="Hospital Universitario Mutua de Terrassa
                     (Terrassa)"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="P8"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            1..441
                     /locus_tag="LQ127_RS25980"
                     /old_locus_tag="AI2858V1_5032"
     CDS             1..441
                     /locus_tag="LQ127_RS25980"
                     /old_locus_tag="AI2858V1_5032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          1051..1131
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.902"
                     /coverage="87.0"
                     /evalue="4.46e-26"
     Typing          complement(676..936)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.511"
                     /coverage="100.0"
                     /evalue="3.95e-106"
ORIGIN
        1 atgagtaagg atgtcgagag aatcactcag ataaatgacc agggtgagat tatcggcggc
       61 ttcgttgccg ttatccgccc taaacaaaaa tcagcatttc agaggcattt caccatgaat
      121 caagacgcat tacggatctt ggctaaggaa ttaaccgggg agcaattcaa ggtcttaatg
      181 ctgatgcttg cagatctgga ttacgaaaac ttcattcaga tcgcccaagc agatattgct
      241 gaaactttag ggatgcagaa aacgaatgtt agtcgcgccg ttcgcgcgct actggatgtt
      301 ggggtgatct ttgagggacc taaagtcggc agatcaaaaa cataccggct gaatgaacaa
      361 tttggttgga aaggcaccgt aaccaaccac aaaaaggcac tcaaaaacgg ctttagtgtc
      421 attcagggcg gccggattta aagagccagc ggcaggcgga caatccacag aacattgcat
      481 gcaatttcta gtggattgtc tatcctgcat tgctcttttg ccgcctcaaa atcccttgcg
      541 tgtttttgct ccccgatctc cagaacgacc gagccgccac ggttccggca gcgccttgag
      601 cgcaaccgga aaccgtctgg ggagaccccc agacccccca tcgctgtaac accgacggtc
      661 tacgaccacc taccaaccga gtggctgctt gtaccgtgca aatgggcttt gcagggggct
      721 ggcgcggttc ctggcgacct gaaagcccct ggctaggggt atcggcgcgc ctgacctcct
      781 gaaacgctct gtaagcgttt ttcgcgcctc ccatgccctg acgggcattt aaaccccgcc
      841 tcgtgcgtct gagagcttct gagcgcgttt gaagggctat ctgacgactc atccccgaaa
      901 gaacaacagc ggaatcaccg acagcatgcg agaggtggca ccgctcgccg cagccccagc
      961 gaccgaacgt tagtgagcga gtgggcgagg aagcggaaga gaacaggaaa ccacattgag
     1021 cacgtacgca ctgatacggg gtgtcggggc gaagctctga ccagatggca aacggaatat
     1081 cgtcgcgggt gacggtatta catttgcaca tcctgtcctg atttctgagg cgttttaacg
     1141 gtgaacggac ggcaaaaaca tgatggagct gttgaacgtg gagagcgaga aatcggacaa
     1201 aaatcatggc tgacgaggct tgcagaggag taagccagta tacactccgc tatcgctacg
     1261 tgactgggtc agggcttcgc cccgacaccc caaagagcag ctaggataaa tatctaatgg
     1321 aatcaatgcg ttagacgcct aatataaaga tacagaaagg agaataaaaa cattaataaa
     1381 atctaagggt tacagttgac atagttatca ataatgataa cactgttatc attattgata
     1441 actcaaatag ggttcaaag
//
