LOCUS       NZ_OW967973             1934 bp    DNA     circular CON 19-JUN-2024
DEFINITION  Escherichia coli isolate 648 plasmid P7, complete sequence.
ACCESSION   NZ_OW967973
VERSION     NZ_OW967973.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065716
            Assembly: GCF_905330275.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905330275.2-RS_2024_06_19
            Annotation Date                   :: 06/19/2024 11:25:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,224
            CDSs (total)                      :: 5,108
            Genes (coding)                    :: 4,875
            CDSs (with protein)               :: 4,875
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 71 of 233
            Pseudo Genes (incomplete)         :: 168 of 233
            Pseudo Genes (internal stop)      :: 39 of 233
            Pseudo Genes (multiple problems)  :: 40 of 233
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW967973.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="648"
                     /isolation_source="Hospital Universitario Mutua de Terrassa
                     (Terrassa)"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="P7"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            245..547
                     /locus_tag="LQ127_RS25970"
     CDS             245..547
                     /locus_tag="LQ127_RS25970"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023150476.1"
                     /translation="MAGSIRARSLYLYLRDNSGDKKWHQALRTKASGLICVVEGFGSIL
                     LGVVALKATPATTAIVRGCDHLQKFDSKRQPTGDTAMITRQMSHRPAWDGVHAKP"
                     /name="hypothetical protein"
     gene            534..1520
                     /locus_tag="LQ127_RS25975"
                     /old_locus_tag="AI2858V1_5031"
     CDS             534..1520
                     /locus_tag="LQ127_RS25975"
                     /old_locus_tag="AI2858V1_5031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     Typing          complement(1247..1435)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
ORIGIN
        1 ggccaaccac ctggaagacg gtttttaatt gtctggtacc ggatacaacc agaacgaatg
       61 gagttggttc tgtcgtgatg cgaaaaagta tgggttcgca aatcacagac taaatagatt
      121 tacccaattc cattcgagtg aggttgttat gttttttgag gttcttaatc atgttgatag
      181 tgcgttgagc gttgctgttt cgctcctggc gttgtggcag tttttggtgg cgggtgggcg
      241 ttgaatggct ggttcgatcc gcgcgcgatc cttgtattta tacttaaggg ataactctgg
      301 cgataaaaaa tggcatcaag ccttgcgtac caaggcttcg gggcttattt gcgttgtaga
      361 aggttttgga agtattctgt tgggagtggt cgccttaaaa gcgacccccg caacgacggc
      421 catcgttcgg gggtgtgacc acctgcagaa attcgattcg aagcgacaac caacaggtga
      481 tacggcaatg ataacacgtc aaatgagcca tcgcccagca tgggacggtg tgcatgcaaa
      541 accctaaact ccagaacctc acggattact ccccctcaga cgcgccctgg gacgctcaca
      601 aaagcgtttc tgacgacgta ggtgggattt accttctcgc agccgaatat gagcgctacg
      661 gggcgcgtat ggcttcctgt ggcggtttac tgaggtttgg ttggtctacc ctcaaagaaa
      721 ctggagaaac tcgccttagg ctacgtgagg cgcatttctg tcgtgtccgg cactgtcctg
      781 tctgccagtg gaggcgatcc ctgatgtggc aagcccgttt ttatcagtcc ctgccgcgta
      841 ttgttgcgga ttatccagat gcacgctgga tgttcctgac cctcacagtg cgaaactgcg
      901 cgatcgggga attgggtgag acacttaacc gaatgaacat ggccttccag cgacttaagg
      961 atcgcaaaga gtttcgacct gttcagggct ggatccgcac cacggaagtt acacgtggaa
     1021 gtgacggtag tgcgcacccg cactttcaca ctctgatgat ggttcctccc tcaatgttca
     1081 cgcgagatta cgttaaacat gaccgctggg tagagctttg gcgagagtgt ttgcgtgtga
     1141 attacgatcc gaatgttgat gttcgagcag taaaaccccg caagcctaag gacggagaat
     1201 cattggcttc tgcaactgcg gaacttgtac ggggcgcagt ggctgaaacc ctgaaatatt
     1261 ccacgaagcc ggctgacatg gttgctgatc ctgaatggtt cctcgaattg actaagcaga
     1321 cacataagcg ccgatttgtg gctaccggtg gcgcactcaa agacatactg aaactcgatc
     1381 aggaaactga tgccgatatg gtaatcgggg atgatattcc cgaaggcgat gatgatggtt
     1441 cacgcattgc ttttgagtgg aaaaccgaat ccaaaaagta ccgtcgctca ccgtcaaaag
     1501 ataaagctga atcagactga cagggtgtcg gggcgcagcc ctgaccacga cgtttttgag
     1561 aggacgccgc ttgtcggcgg tactccaaaa acacatcttg tcctattggt tctactccga
     1621 tgcaggatag ggctaacgcc gcaaagtgac gtcactcaat tactgagttc ggtttccgaa
     1681 ctcagttggg acaagatgtg tttttggtac accgccatca cgatgtcggt gccaaaaacg
     1741 attcgtcagg gctgcgcccc gacaccctgc caacacctca cgcagtcaga ttaaaatctg
     1801 ccagcgctcg ctgtttccga aatcgtcaaa ctctaaatcg tggggtcccg ctggcttgcc
     1861 agtgggttcc gatttagtga ttgacgacat tgctgattga aaaattggct gaggtggttg
     1921 gattcacgaa gtga
//
