LOCUS       NZ_OW967880             4831 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens isolate 0 plasmid P2, complete sequence.
ACCESSION   NZ_OW967880
VERSION     NZ_OW967880.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065745
            Assembly: GCF_905330555.1
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:09:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,035
            CDSs (total)                      :: 4,910
            Genes (coding)                    :: 4,881
            CDSs (with protein)               :: 4,881
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 10 of 31
            Pseudo Genes (incomplete)         :: 19 of 31
            Pseudo Genes (internal stop)      :: 10 of 31
            Pseudo Genes (multiple problems)  :: 6 of 31
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW967880.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4831
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /isolate="0"
                     /isolation_source="Hospital Universitario Ramon y Cajal
                     (Madrid)"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="P2"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            139..402
                     /locus_tag="LQ139_RS25145"
                     /old_locus_tag="AI2887V1_4832"
     CDS             139..402
                     /locus_tag="LQ139_RS25145"
                     /old_locus_tag="AI2887V1_4832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_308351601.1"
                     /translation="MIEDDIEKQMSLKMKYELLARFFYYIEQDKDIPFGEINSDEKRLC
                     YFVAHRYIQENKADDLLKSLIDENDEDYIKAIRDYMFTTTGV"
                     /name="hypothetical protein"
     gene            404..775
                     /gene="mobC"
                     /locus_tag="LQ139_RS25150"
     CDS             404..775
                     /gene="mobC"
                     /locus_tag="LQ139_RS25150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_043085801.1"
                     /translation="MDTDRKRGRIGLNHEVRRDISIQFRVNKAEFEYLKELVEASGLER
                     GHYIRKEILNSEPIVKRKMPDFEQSLFKEIQHQGNNINQIAKKLNTNEDFKQSVAAEAN
                     FAIKQLMKRILKACEVYTV"
                     /name="mobC"
     gene            772..2247
                     /locus_tag="LQ139_RS25155"
                     /old_locus_tag="AI2887V1_4833"
     CDS             772..2247
                     /locus_tag="LQ139_RS25155"
                     /old_locus_tag="AI2887V1_4833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000678150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_308351602.1"
                     /translation="MKGNVAKSGKSFKNRVDYILKDDHDFICSNMASDYNNVSDLTDEF
                     KTVSSFRQDIKKPVFHAFLSLPKNEHLTDEQWQEIAKDYLKEMNIDIEKHQYICVRHND
                     TDKEHIHIVANRVGLDGSVWLGQHSAFNTIAACERLEVKHGLTITDGLKGQKSDVSAPT
                     KAEIEQALRTGEKPARIVLQNALQAAMTGKPDLGEFVERLQAVGIEPRFNVASTGNVAG
                     CSFSVGDVAFKGSQLGKKFSWNTIKTKVKYDKNRDDELIRRFAARKTDDENSIGRSPTE
                     PDFNDSRAIDRNDDDIIRVSEHSIKSDAADTNKSEQLIRGNNNSFRLSEKYNRPASHKV
                     RRAAQKATQVLNRVKKQYIKEPIKTYNKSSFNRGSNTFSGSSISRILDHAETATTATNN
                     FRLKGRRNINSRATKIEEIRDKLGIKKPIIQPKNKEKVIKEEIKKKPLGLSMNENRFKS
                     KLKEAIKKEKPKNETIPQQEDDQHLKPRGFKPR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2256..2525)
                     /locus_tag="LQ139_RS25160"
     CDS             complement(2256..2525)
                     /locus_tag="LQ139_RS25160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication protein"
                     /protein_id="WP_308351603.1"
                     /translation="MKVKNRKRELTAKEYAEQYEISVRTVKRYFSQDREDYEKEAKQRR
                     LKAFVLREAGFKWSEVGEKLGTTKHGAIALYKRYQQIDAPIKEA"
                     /name="plasmid replication protein"
     gene            complement(2522..3373)
                     /locus_tag="LQ139_RS25165"
                     /old_locus_tag="AI2887V1_4834"
     CDS             complement(2522..3373)
                     /locus_tag="LQ139_RS25165"
                     /old_locus_tag="AI2887V1_4834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000481810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_308351599.1"
                     /translation="MFKIENNKDILKSQIPLKPYATNDLDFGLTIQNKNKALDMLYLQV
                     NHPLYLHTMVFDLDKENCFYEFENAHLPIPSFITKSPDSGRCHYGYMLNAPITSTEKSR
                     QKPVKFARALYYNIANRLGADLGYAGLITKNPLNPHWSPFWSGADLYELNDLADCFDDL
                     EEPKKRENTGFAFGRNVEMFDTIRQWAYKNVLKYQSESSFNDFHNELLLKCQMHNAYIN
                     ADDLLPYNEIKATAKSIAKFCWKEFSEEKLNKIQSKKQSYRGKKNKGIVKSKTRKFLEA
                     IK"
                     /name="replication initiation protein"
     gene            3672..3896
                     /locus_tag="LQ139_RS25170"
                     /old_locus_tag="AI2887V1_4835"
     CDS             3672..3896
                     /locus_tag="LQ139_RS25170"
                     /old_locus_tag="AI2887V1_4835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001171587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_308351600.1"
                     /translation="MHEQKDKKRRLGFMIGKSNATLPADEQTEAELDQEVLKLFYPNQY
                     TKDTIERSEAGTDVFTASGSDDLFKKLKL"
                     /name="hypothetical protein"
     gene            4528..4785
                     /locus_tag="LQ139_RS25175"
                     /old_locus_tag="AI2887V1_4836"
     CDS             4528..4785
                     /locus_tag="LQ139_RS25175"
                     /old_locus_tag="AI2887V1_4836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_225584390.1"
                     /translation="MNIVLSVSKCLYINDLDRLLPCDRFFVHLDYRDISKKESFEMNRH
                     DKETYKLIFDKLVGNDVMLAIDEDIYSEVVENLLYYSNNK"
                     /name="hypothetical protein"
ORIGIN
        1 tattatgctc ggcggtttta tgattaggag ctgcacagga aaaacaaact catcaagtga
       61 agcaaagcaa gcaatatcgg atgttagaaa aatgatagat aaaaaagcac tgattaaata
      121 taagaggaat aacagaatat gattgaggat gacatagaaa aacaaatgag tttaaaaatg
      181 aagtatgagt tattagcacg ttttttttac tacatagaac aagataaaga tatacctttt
      241 ggtgaaataa atagtgatga aaaaaggctg tgttattttg tggctcatag gtatatacaa
      301 gaaaataaag ctgatgatct tctaaaatct ttgattgatg aaaatgatga agactatata
      361 aaagctataa gagattatat gttcactact acaggggtat aatatggata cagacagaaa
      421 aagagggcgt ataggattaa atcacgaagt acgtagagat atatctatac agtttagagt
      481 aaacaaagca gagtttgaat atttaaaaga acttgtggaa gcctccggcc ttgagagagg
      541 ccactatatc agaaaagaga ttttaaactc tgaacctatt gttaaaagaa aaatgccgga
      601 ttttgaacaa tccttgttta aggaaataca gcatcaaggt aataatataa atcagattgc
      661 taaaaaacta aataccaatg aagactttaa acaatctgta gccgcagaag ctaactttgc
      721 tataaagcaa cttatgaaaa gaatattaaa ggcttgtgag gtttatactg tatgaaagga
      781 aacgtagcta aatcaggtaa gtcctttaaa aatagagttg attatatatt aaaagatgat
      841 cacgatttca tatgtagcaa catggcaagt gattataata atgttagtga tttaactgat
      901 gagttcaaga ctgtaagcag ctttagacaa gatataaaaa aacctgtttt tcatgcgttt
      961 ttatctcttc caaaaaatga acatttaaca gatgagcaat ggcaggagat agcaaaagac
     1021 tatttgaaag aaatgaatat tgatattgaa aaacatcaat atatttgtgt gcgtcataac
     1081 gatacagata aagaacatat ccatatagta gcaaatagag tcggtttaga cggttcggta
     1141 tggcttggtc agcactcagc atttaacaca atagcagctt gtgagcgttt agaggtaaag
     1201 cacggcttaa ccattacgga tggcttaaaa ggtcagaaat cggacgtatc agcaccaacc
     1261 aaagcagaga tcgagcaagc actccgtaca ggtgagaaac cagctcgtat cgtgctacag
     1321 aacgcattac aagcggctat gacaggaaaa ccagacttag gggagttcgt agaacgtctg
     1381 caggccgtag gcattgaacc gaggttcaat gttgccagca ctggcaacgt ggcgggttgt
     1441 tctttcagtg ttggagatgt tgcattcaag ggatctcagt taggtaaaaa atttagttgg
     1501 aacactatca aaacgaaggt gaaatatgac aaaaatagag atgatgaact cattagaaga
     1561 ttcgcagcaa gaaaaacaga tgacgaaaat agtattggac gatcacctac tgaaccagat
     1621 ttcaatgaca gtagagccat tgacagaaac gatgatgata ttatcagagt cagtgagcac
     1681 agcattaaat cagacgcagc agacactaac aagagtgaac aactcattag aggcaacaac
     1741 aacagcttta gactcagcga aaaatataat agaccagcaa gccataaagt tagaagagca
     1801 gcacagaaag ctacacaagt actcaacaga gttaaaaaac aatacattaa agaaccaatc
     1861 aaaacttata ataaaagtag ctttaatcgt gggagcaata catttagcgg cagttctatc
     1921 agtaggatac ttgatcatgc agaaacagcc acaacagcca cgaataactt tagactcaaa
     1981 ggccgtcgca acatcaatag tagagcaact aagatcgaag agataagaga taaacttgga
     2041 ataaaaaaac ctattattca gccaaagaat aaagaaaaag tgattaaaga agaaataaag
     2101 aaaaagccgt taggtttgag catgaatgaa aatagattta aatcgaagtt aaaagaagct
     2161 attaaaaaag aaaaaccaaa aaatgaaaca ataccacagc aggaagacga tcagcattta
     2221 aaaccaagag gttttaaacc gcgataaaag aggctttaag cctcttttat tggtgcgtct
     2281 atttgttgat agcgtttata aagagctata gccccgtgtt ttgtagttcc cagcttttcc
     2341 ccaacttctg accatttaaa gccagcttca cgtaatacaa acgcttttaa gcgtctttgt
     2401 tttgcttctt tctcatagtc ttcacgatct tgagaaaaat atcttttaac tgtcctaacg
     2461 ctaatctcat actgttcagc atactctttt gctgtaagtt ctctttttct atttttaact
     2521 ttcattttat cgcctccaaa aacttacgag ttttactttt tactattcct ttgtttttct
     2581 ttccacggta agactgtttt ttactttgta tcttgttgag tttttcttcg ctgaattctt
     2641 tccaacagaa ctttgctata ctttttgctg tggcttttat ctcattatat ggcagtaaat
     2701 catcagcatt tatatatgca ttatgcattt gacactttag caatagttca ttgtgaaaat
     2761 cattaaatga gctttcactc tgatatttta gcacattttt ataagcccat tgccttatgg
     2821 tgtcgaacat ttcaacatta cgcccaaaag caaaccccgt attttctcgt ttttttggtt
     2881 cttctaaatc atcaaagcaa tcagctaaat catttaactc atataaatca gcacctgacc
     2941 agaacggcga ccagtgagga tttagcgggt tttttgtaat cagtccggca taccccagat
     3001 cagcacctaa acggttagct atattgtaat ataatgctct ggcaaacttt actggcttct
     3061 gcctgctttt ctctgttgat gttataggag cattaagcat ataaccgtaa tgacatctac
     3121 cagagtctgg tgattttgtt ataaaagacg ggatgggcaa atgagcattt tcaaactcgt
     3181 aaaagcagtt ttctttgtct aaatcaaata ccattgtatg aagataaagc gggtgattta
     3241 cttgtaaata aagcatatct aaagctttat tcttattttg aatagtcaat ccaaaatcaa
     3301 gatcattagt agcatatggc tttaaaggta tttgactttt taatatatct ttgttatttt
     3361 ctatcttgaa catatagcag tatcctttct gtaatgcccc gttctctcac tggtcgccaa
     3421 actaatcaga gaacgcgggc ttttctttta tttataatct cttacagttt tactatacca
     3481 aaaaaacttg tcaatagatc cgtcaaaaaa agttgttatg tgtgccatta accaatatca
     3541 ggtattagac ggagtttttg gaacactaca ccacagcgaa gcacaggccg aaggctacag
     3601 cagagtaaag taacactgta acgtatacta aacttcatat gcaggatctg gctgtgctgg
     3661 ggaggtaaat catgcacgaa cagaaggaca agaaacggcg gttaggtttt atgattggta
     3721 agagcaatgc aacattgcca gcagacgaac aaacagaagc agagcttgat caggaagtcc
     3781 tgaagctgtt ttatcctaac caatacacta aagacaccat agaacgctca gaagccggta
     3841 cagacgtttt cacggcctcc ggttctgatg acctgttcaa aaaattgaag ctgtagaggg
     3901 taggggagag ctggccatct tcaccagttg agaacaaacc gacccggaac ggtgagagaa
     3961 ggccaaccct cgatgcagta tatactgatt tatactaatc tatagtgttg attttatagc
     4021 catttcaaac ccatagacgc cagcaacagc agaaaagcaa gttttctact gttctgtcgc
     4081 cgctgatcaa accccatccc tttgcatctg gtgaaatctg cctgctaagt ggtcacgaac
     4141 ttttccagat ttcacgtagc agcggcattt tttacgcaaa gctacctatt acgcacagct
     4201 acccatcaag acaatatatt atttatccta ttttttattt gcattttatt tgttgtgcag
     4261 tgtatttatt tatgtagccg ctatattgac aaacttttta gatcggttat ttatttaaat
     4321 ataggttgag ttcagcttta tttttagctt ttcggaaact gaggcaaggt gtaatcccgt
     4381 agccggtatt ataccccaat cttcgattgg ccccctctca cttcgttcgg agggttgaaa
     4441 aacaaaaagc tctaccttcc gcttatcacc tatcaaggtg agcggtaaat agttttacag
     4501 ttcacttcaa aacaaaaagg aataaatatg aatatagttt tatcagtatc aaaatgttta
     4561 tacataaacg atttagatcg cttacttccg tgtgatcgtt tttttgttca tttagattat
     4621 agagatatta gcaaaaaaga gtcatttgag atgaatagac atgacaaaga aacctacaaa
     4681 cttatctttg ataaacttgt aggtaatgac gtaatgcttg ctattgatga agacatatat
     4741 agcgaagttg tcgaaaactt actttattat tcaaataata aataaggagt tatatatata
     4801 tgattatagc aatagcaatg atgcttcttt g
//
