LOCUS       NZ_OW967804             2088 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Escherichia coli isolate 410 plasmid P2, complete sequence.
ACCESSION   NZ_OW967804
VERSION     NZ_OW967804.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065704
            Assembly: GCF_905330145.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905330145.2-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:56:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,714
            CDSs (total)                      :: 4,597
            Genes (coding)                    :: 4,373
            CDSs (with protein)               :: 4,373
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 224
            CDSs (without protein)            :: 224
            Pseudo Genes (ambiguous residues) :: 0 of 224
            Pseudo Genes (frameshifted)       :: 75 of 224
            Pseudo Genes (incomplete)         :: 139 of 224
            Pseudo Genes (internal stop)      :: 48 of 224
            Pseudo Genes (multiple problems)  :: 31 of 224
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW967804.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="410"
                     /isolation_source="Hospital Clinic (Barcelona)"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="P2"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            complement(join(2004..2088,1..881))
                     /locus_tag="LQ147_RS23460"
     CDS             complement(join(2004..2088,1..881))
                     /locus_tag="LQ147_RS23460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_039064478.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLAIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            complement(1734..2000)
                     /locus_tag="LQ147_RS23465"
                     /old_locus_tag="AI2843V1_4523"
     CDS             complement(1734..2000)
                     /locus_tag="LQ147_RS23465"
                     /old_locus_tag="AI2843V1_4523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          complement(257..488)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 gtgccatccc ctacatcgtc ggcaatggca agatcctcat tggtttctcg atccaactgg
       61 aggacgtttt ttagcgctcc accggtcgag ataaaacggc gcttgtgaag ctgccgcgtc
      121 agctcaagaa accactcagg atcgtttgcc atatcttccg gtttaacgga gtatttcagc
      181 gtttcagcaa ccgcgctttg cagttgctcg gcaacgttgg ccacaacctc acctgtctta
      241 gtttttactg cccgaatatc gatattcggc tcatagttca cccgcaagca atcgcgccag
      301 agttctaccc aacgttcgtg cttaacgtag ttcttccctt taaaccaaga aggttgcacc
      361 atcagcagac agtgaaaatg cggatgtgcg ctgccatcct tacctcgcgt cacctccgta
      421 gccctgatcc acccctgaac aggtgatagc tcctttcgct tttccattcg cttaaacgcc
      481 gcattcattg ctgtaaggac tgttccaagt tcacctatct cgcagttcct gacagttaac
      541 gtcagaaaca accatcggga agacgggtaa tccacaacga ttttcggtag agcctgataa
      601 aaacgggctt gccacatgag ggttcttctc cactggcaga cagggcaatg acggacacgg
      661 caaaattgcg cactacgaag ccgtaggcgc gtttctccgg tttccatgat ggtagaccaa
      721 ccaaaacgta acaaaccgct acaggaggcc atacggagtg catagcgctc gaattcagca
      781 gcagtctggt agataccccc gacagaatcg gtaagcgtgc gctgggtatc ccaaactgca
      841 tcacgggggc tgtagtccga aaggaattta tcttctgaca ttaagcctgc tccgatctgg
      901 gcaggctgtg atttgatgtg gtatattcat cacgtacctg tgcattgcga gccagtacat
      961 gtcaccagag tttgccgctg aggtgacaca ttcgaaatgt tggggagtgt tgacgcactc
     1021 cccaacgccg attaaaaacg cctcaattct gctccatttt ctttgacctg tcaaaaccca
     1081 ctcaaagcct cgtcattact gggctaaacc actatttcat acccgccatt tatcccttaa
     1141 gtataaatac aaggatcacg cgcgagaatt gcgcaaaaaa taaccacaat tttaaccccc
     1201 caaaacaagc accccgaacg gcttacccca accttttcca cacacccgat caccaaaaca
     1261 ggggataaaa acaaaaccct gtcttacagg tggatggcct cacttcgtga aaccatccac
     1321 cccgcataag ttttttaatc ggtggtgtcg tcaatcacta aatcggaacc ccaaagggga
     1381 cccccacgat ttagcatttg acgagattaa ctctcggaga tggcatcatg cttttaacgg
     1441 actttaaaaa acggtgaacg gatgcggatt ttaatccgtg tctgtgaggc gttgagcaac
     1501 gagcaaagcg aggcggtaga aagagagcca gcggcaggct caggacgata atccggggaa
     1561 aatgtaccac tcgcagagtg ttaacatttg acatcggatt gtctatcctg cattggtgtc
     1621 gagttggcaa ggctgaggat aatgctgagg ataatgcagg atagacagag cactagagat
     1681 tgcatgcaat ctcgtaccta tcacctcagc ctgccgctgg ctcttttcca gaactaagaa
     1741 tgcgttctta aaaatccaaa cttgataccg tttaaatcta ttttcacaaa aagagttttt
     1801 accctctcgt ttgttttctg aatatataaa attaattcat cctcaaaacc ttcgtgcgga
     1861 tgaaaaccaa atgtgccaaa acttaatcca tcaataagca aaataaggtt tttaaacctg
     1921 tcaggaatca ccgcttcact tcttaaaaaa aataaaccaa tagtcttatt tccattcagg
     1981 tattcaatat taatattcat acgttaatcc gatttatcct tctcaggggc gcgtttgtaa
     2041 cgccgtttac ctgaatccca gacaaacgcc gtccgcttcc cgtcatca
//
