LOCUS       NZ_OW967522             2495 bp    DNA     circular CON 04-JUN-2024
DEFINITION  Klebsiella oxytoca isolate 2 plasmid P4, complete sequence.
ACCESSION   NZ_OW967522
VERSION     NZ_OW967522.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065822
            Assembly: GCF_905329555.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905329555.2-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 06:15:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,061
            CDSs (total)                      :: 5,941
            Genes (coding)                    :: 5,837
            CDSs (with protein)               :: 5,837
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 42 of 104
            Pseudo Genes (incomplete)         :: 65 of 104
            Pseudo Genes (internal stop)      :: 18 of 104
            Pseudo Genes (multiple problems)  :: 20 of 104
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW967522.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /isolate="2"
                     /isolation_source="Hospital Universitario Marques de
                     Valdecilla (Santander)"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="P4"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            1060..1251
                     /locus_tag="LQ214_RS30255"
                     /old_locus_tag="AI2744V1_5915"
     CDS             1060..1251
                     /locus_tag="LQ214_RS30255"
                     /old_locus_tag="AI2744V1_5915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021243041.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQILSETEPAV
                     RTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(1542..1727)
                     /locus_tag="LQ214_RS30260"
                     /old_locus_tag="AI2744V1_5916"
     CDS             complement(1542..1727)
                     /locus_tag="LQ214_RS30260"
                     /old_locus_tag="AI2744V1_5916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2093..2320)
                     /locus_tag="LQ214_RS30265"
                     /old_locus_tag="AI2744V1_5917"
     CDS             complement(2093..2320)
                     /locus_tag="LQ214_RS30265"
                     /old_locus_tag="AI2744V1_5917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          1408..1495
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(241..769)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 catataccaa gatgatttaa gtattcctct ttgtgaggtt ggatgtctaa tttataaagg
       61 atcttcttga gatccttttt ttccgcgcgt aatctcttgc cctgtaaacg aaaaaaccac
      121 cctggcaggt ggtttttcga aggttaggta atcctggcag atcccctaac cgtggtaaca
      181 gtcttgtgcg agacatgtca ccaaatttgt cctttcagtg tagcctcact aaggccgcca
      241 cttcaagaac tcttgagaca tctctcgcac atcctgtttg ccaatggccg ttgccaatgg
      301 cgattagtcg tgtctttccg ggttggactc aagttgatag ttaccggata aggcgcagcg
      361 gtcggactga acggggggtt cgtgcataca gtccatcctg gagcgaactg ccttcccgga
      421 actgagtgtc aggcgtggaa tgagaaaccg cggccataac agcggagtga caccggtaaa
      481 ccgaaaggca ggaatgcggg ggagcacgag ggagccacca gggggaaacg cctggtatct
      541 ttaagccgca tcgggtttcg ccaccactga tttgagcgtc agattctgtg atgcttgtca
      601 ggggggcgga gcctatggaa aaacggcttt ggcgcggcct tatgctttct tcgttaagta
      661 tcttcctggc atcccccagg aaatttctga tccatccgta agcccgtccc gctcgccgca
      721 gccgaacgac cgagcggagc gagtcagtga gcgaggaagc ggaatatatt ctgtatcaca
      781 ttttctcctg acgcgttttc tttcactttc tgcgcctgtc ttatgtggca ttaatgctat
      841 gtgttactgc catgctacat cttaagccag tatacactcc gctagtgctc cgtgactggt
      901 ccggcgctgc gcccggaacc cgcctgtacc ggttcagcag ccgttccggc ctgactgcaa
      961 tttttttttt ttcatccctg cccgctaccc tgtaaacctt tcttctgcgt tgccgttaac
     1021 agtaggtaag ccatgtttgg tttttcttcc ggagccctga tgactcttag tgatgatgag
     1081 cgacacctgc ttgtgtccgt tgtttcggtc tggctacggc gtgccggagg ggatgccgga
     1141 gccatgatgc tggatgcata ccggcagatt ttgtctgaaa ccgaaccggc cgtaaggact
     1201 gtcatgctcg aatttcttga atccgttcgc attcattaca tttcgtcctg agcattttct
     1261 gtatttctgt ccatacttaa acgaggcggc cgtcacggac ggtggtcgtc gttccatgat
     1321 gctgttatgg acgagtgaga gtaatctaat ctaacttgat tgagttccgg gcgtgccgcc
     1381 cggttttttt tgctgtttcc cggtgtccgt tccgggacag gatgtgcatt tgtaataccg
     1441 cgcacgcgcc ggcatcacaa ataccctggt cagggctgcg ccccgacacc ccgccatcgc
     1501 ctcacggccg cgcactgaat tgcgcacccg ttcaccgatt ttcacgcatt ttcctcgcct
     1561 atctgtgcgt tcagcatggc gtaaagcgct tcggcctgat cgtgcaggtg ctcacagcag
     1621 ccggcagcct catccagatc catctgctcg agccgctcaa ggaggagaag tgtctgtgcg
     1681 cggataaatt tggccatatt gagggcggcg gattcctgtc tggtcactgg tgattttccc
     1741 cgtctggtga tgatttttgc gtgaaaagag catggcgtca ttctggtgca tagtcatgca
     1801 tgccgttaaa atttaacagg cgcgtttctg acgggttccg gggtggtttg ttgtggtttt
     1861 tgtcatggtt tcgtcaggaa cgcgctgaac gcgtctcagg cggtgcgggc aacggatgtt
     1921 atggtaaatt cttgggggct tgattataaa ataccgcact tcctcttatg tcttgtgctt
     1981 tttagacaac cctgaaagct tttagctttg gtgatgcaat ttgctgggat tttggcggag
     2041 aaccacaggt aaagaaaaag gccacattag cggccttttt cggagaagat gctcagtgcg
     2101 gaatttcgga gacttcttta acgtcggttt tattgatctg ctgtttgaca ccattcgcgt
     2161 ctgtatagcc aagcaggcct gagtctgatt ctttaggttt gccgtcgctg acaatagtgc
     2221 gaccgtcatt ggtgtgtatg gcatagcttg tgcgcgtgca gccggtgagg gctgaaagcg
     2281 caactgccgc tgcgaacact gaaacaaaaa tctttttcaa agccagctcc ttttatccat
     2341 atcagttttg gtcactaacc atctaactat aggtcatttt ttatgtgaaa agaggcttga
     2401 tggtgggctg tatatcgagt taggcgcgag gtgctatggt caaagtgtgg tgtcaggcgg
     2461 ggaggaggct tatatgagat gtaatccggc cgata
//
