LOCUS       NZ_OW967380             2546 bp    DNA     circular CON 04-JUN-2024
DEFINITION  Klebsiella oxytoca isolate 145 plasmid P6, complete sequence.
ACCESSION   NZ_OW967380
VERSION     NZ_OW967380.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065686
            Assembly: GCF_905322525.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905322525.2-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 06:28:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,118
            CDSs (total)                      :: 5,998
            Genes (coding)                    :: 5,859
            CDSs (with protein)               :: 5,859
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 57 of 139
            Pseudo Genes (incomplete)         :: 96 of 139
            Pseudo Genes (internal stop)      :: 22 of 139
            Pseudo Genes (multiple problems)  :: 30 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW967380.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /isolate="145"
                     /isolation_source="Hospital General de Alicante (Alicante)"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            join(2323..2546,1..376)
                     /locus_tag="LQ212_RS30490"
     CDS             join(2323..2546,1..376)
                     /locus_tag="LQ212_RS30490"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_250323499.1"
                     /translation="MKKKNNIEYLQLNNAENSEDFDIEHKKSPFVFNMEIDTKKKKLTV
                     DRGSELETEEGVFTTTISQIQEVDKEEFLKLFTGQIKFYFDLTQTGFKLFFLIMGIYQK
                     QIGGDEIYLNFETAKEEAEKYDYTISKAVYYRGLKELLEKKMIAKSVKKYIFYINPAIV
                     FNGDRARFVKEIRIKEEEKQREADLKSINERLDRYA"
                     /name="hypothetical protein"
     gene            complement(425..1597)
                     /gene="mobV"
                     /locus_tag="LQ212_RS30495"
                     /old_locus_tag="AI2623V1_5947"
     CDS             complement(425..1597)
                     /gene="mobV"
                     /locus_tag="LQ212_RS30495"
                     /old_locus_tag="AI2623V1_5947"
                     /inference="COORDINATES: protein motif:HMM:NF013258.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_181466078.1"
                     /translation="MAYAILRVEKTKNTSIAGKNSHNMRLRKTHNADPNLKSQNRILIG
                     SGDLRTDINARFQATNVKARNSTSVICNELVLTASPEFFENNKKLEDWIKVQMEYLQSE
                     YGENAINAVLHLDEQTPHIHAFITPIENKNGIYKLNNKSYMKKYETMQDIYFKYNKPLG
                     LIRGIKKEVSNAEYKEVKEFYSDIKNIKNETNLEIENNKIEKIRVVETEEKKKLFRDPE
                     VVPKHYTGAEVNRYIRKALKPYKNERKPLIARLNGFKSRLEHSEAELSDLRQNFNRRVQ
                     ERVQQEQKLAVARATAEQEQIIQNKNRKIKDMELEIIEYKRQLKENASISQRYEKYKIN
                     SDVLDLIQEHKPAEFKQLFNAAIAAADAEYSQKQQNNNYTPQNKPKALKL"
                     /name="mobV"
     Typing          complement(426..622)
                     /name="Col(IMGS31)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.85e-99"
     Typing          complement(429..1597)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.487"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gctgtttact ggtcaaatta aattctattt cgatttgact caaacagggt ttaaattatt
       61 tttcttgatt atgggtattt accaaaagca aatcggcggt gacgaaattt acttaaattt
      121 cgaaacagca aaggaagaag ctgaaaaata tgattatact atttcaaaag ctgtttatta
      181 tcgcggatta aaagaactat tagaaaagaa aatgatcgca aagtctgtta agaaatacat
      241 attttatata aatcctgcaa ttgtatttaa tggcgatcgt gcaaggtttg ttaaagagat
      301 ccgaattaag gaagaagaaa aacaaagaga agcagattta aaaagcatta atgaaagatt
      361 ggatcgatat gcttaaaaaa ccaaaaccca acgggaaatt tttcactgtt tcccgttccg
      421 ggctttataa ttttaaagcc tttggcttat tctggggtgt gtagttatta ttttgctgtt
      481 tctgtgaata ttcggcatct gctgctgcaa tagcagcatt gaagagttgt ttaaattctg
      541 ccggtttatg ctcttgtatt agatctaaaa catcactgtt aattttatat ttttcatatc
      601 tctgagaaat tgaagcattt tcctttaact gccttttgta ttctattatt tccaactcca
      661 tatcttttat ttttctgttt ttattttgaa tgatttgttc ttgctcagcc gtggctctgg
      721 ccactgctaa cttttgctcc tgttgtaccc gttcctggac tcttctgttg aagttctgac
      781 ggagatctga caactcagcc tctgaatgct ctaaacggct cttaaacccg tttagacgag
      841 ctataagggg ctttcgttcg ttcttgtaag gttttagagc ctttcgtatg taacgattaa
      901 cctcagctcc tgtgtagtgc ttaggcacta cctccggatc tctaaataat tttttctttt
      961 cttctgtttc aacaactcta attttttcaa ttttattatt ttctatttcc aagttagttt
     1021 catttttaat gtttttaata tcgctgtaaa attctttaac ctccttatat tctgcattcg
     1081 aaacctcttt tttaatccca cggattaaac ccaatggctt attgtattta aaatatatat
     1141 cctgcattgt ttcgtatttt ttcatatacg atttattgtt tagtttatat attccgtttt
     1201 tattttcgat tggtgttata aaggcgtgaa tgtgtggagt ttgctcgtcc aagtgtaaaa
     1261 ctgcattaat tgcattttcc ccatattcac tttgcaaata ttccatttga actttaatcc
     1321 aatcctccaa ttttttgtta ttttcaaaaa attctgggga agctgttaat actaattcat
     1381 tacaaataac agaagtagaa tttcgagctt taacattggt tgcttgaaac cttgcattaa
     1441 tatcagtcct taaatcacca gaaccgatta aaattcggtt ttgggattta aggttaggat
     1501 ctgcattatg tgttttcctc aatcgcatat tgtgagaatt tttcccggcg attgaagtat
     1561 tttttgtttt ttccactctt aaaattgcat aagccatatt cgaaaacctc ccggtaaaag
     1621 cagtaaggtt tttttctttt tggcccctgc caggctcaca ccgagatttc tcggtatagt
     1681 gagtatacct tttctgcaaa attgaaaatc tataaataca tctacaataa aaaaaacaaa
     1741 agtcaacgga tcaatccctc gcaagggaaa attaaaattt ccccttactc acgatttcca
     1801 ataaaagaaa aaagacagaa cgctgagcaa gtcaaaattt taattttggc ttgtgaaggg
     1861 ttgaccaagc gaagcgcggt agggaaatct gcgcagattg cttatgtatt gcccggaacg
     1921 ggaaacgtct gttgtagcgg tagcgaaaac acatctcccg gaagggggtt ttcttttgcg
     1981 tagcctggca agttctgcag atagggctgg gactaggttg aatcctctta gatcttatat
     2041 ttcttatatt cttaaggggt ctgtaacccc cgtaaaacct aacggtctag tctctcacat
     2101 gtaaaaaaat tctctcctga gagaatttat tctctcctga gttactaata gtctctcctg
     2161 agttactatt tgtatcgttt ttttttgaaa aaacgagaaa atatttagtt tagctctctt
     2221 gactagtttc aaaaatctgt taaaaaatga gaaaacgagt ctcatcgagt gagaaaaaac
     2281 ccgtttaaaa aatatacaaa ttaaactaaa agagaggtgt ttatgaaaaa gaaaaataat
     2341 atagagtatt tacagttaaa caatgctgaa aatagtgagg attttgatat tgaacacaag
     2401 aaaagtcctt tcgtgttcaa tatggaaatt gatactaaaa agaaaaagct aactgttgat
     2461 cgaggttctg aattagaaac cgaagaagga gtttttacta caacaatttc acaaatccaa
     2521 gaagtagata aagaggaatt tttaaa
//
