LOCUS       NZ_OW967379             5413 bp    DNA     circular CON 04-JUN-2024
DEFINITION  Klebsiella oxytoca isolate 145 plasmid P5, complete sequence.
ACCESSION   NZ_OW967379
VERSION     NZ_OW967379.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8065686
            Assembly: GCF_905322525.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905322525.2-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 06:28:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,118
            CDSs (total)                      :: 5,998
            Genes (coding)                    :: 5,859
            CDSs (with protein)               :: 5,859
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 57 of 139
            Pseudo Genes (incomplete)         :: 96 of 139
            Pseudo Genes (internal stop)      :: 22 of 139
            Pseudo Genes (multiple problems)  :: 30 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW967379.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /isolate="145"
                     /isolation_source="Hospital General de Alicante (Alicante)"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="P5"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            183..506
                     /locus_tag="LQ212_RS30455"
                     /old_locus_tag="AI2623V1_5940"
     CDS             183..506
                     /locus_tag="LQ212_RS30455"
                     /old_locus_tag="AI2623V1_5940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_007899679.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTAKLPSI
                     SPALLRQLAGMGNNLNQIARRVNAGVGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            715..>1149
                     /locus_tag="LQ212_RS30460"
                     /pseudo=""
     CDS             715..>1149
                     /locus_tag="LQ212_RS30460"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1184..1675
                     /locus_tag="LQ212_RS30465"
                     /old_locus_tag="AI2623V1_5941"
     CDS             1184..1675
                     /locus_tag="LQ212_RS30465"
                     /old_locus_tag="AI2623V1_5941"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_016355729.1"
                     /translation="MSSLLTLAKDLEQQSKAQQKSTGEMLKAAFSEHEQSVRAELNASA
                     RRISDAISAHEQSMSEAMEKNRRSVLLTAGRTWLTILMVSALLIATSGSILWWQGRQIT
                     DNYTHLRQQEDTLAKMTARTWGVRYQESNDGRRFLILPPGMQAEAIPYDGTTWIRLKQE
                     "
                     /name="MbeB family mobilization protein"
     gene            1682..1897
                     /locus_tag="LQ212_RS30470"
                     /old_locus_tag="AI2623V1_5942"
     CDS             1682..1897
                     /locus_tag="LQ212_RS30470"
                     /old_locus_tag="AI2623V1_5942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137422.1"
                     /translation="MTELEKQLLSALEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     VLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="MbeD family mobilization/exclusion protein"
     gene            3022..3534
                     /locus_tag="LQ212_RS30475"
                     /old_locus_tag="AI2623V1_5944"
     CDS             3022..3534
                     /locus_tag="LQ212_RS30475"
                     /old_locus_tag="AI2623V1_5944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001445155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001276096.1"
                     /translation="MSARARKAGKRNQSERRQDLIEKLWEDDEIDTWHRLENDGYSTVP
                     RYLPLIGDLMDGLSKGSPLSTTYLALWFRVSDEGLIEIRDKAALAFESGFASERGVTTW
                     AGRMKKLKELGFISCREGSTGEFHYVLIVHPLVAVKKLLDEGIIPKGKTYNILSERVIE
                     VGASWEG"
                     /name="hypothetical protein"
     gene            3535..4029
                     /locus_tag="LQ212_RS30480"
                     /old_locus_tag="AI2623V1_5945"
     CDS             3535..4029
                     /locus_tag="LQ212_RS30480"
                     /old_locus_tag="AI2623V1_5945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000929317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000929317.1"
                     /translation="MAGTVWRDIRTGETVFPMGHLHPQRCCVDVNGTSVDIEISFGFHV
                     FTDEKQTGMLMKFKEEQRFFCRERYEGSKTIVHRILTAIENGEYITAFISKGQGQRYYH
                     LSHHDDFILMEIRKPQDRNNSLRIHVVTAYTLDEWGTVNKGRNLRFRYVLEQRLQGKKI
                     V"
                     /name="hypothetical protein"
     gene            4302..4628
                     /locus_tag="LQ212_RS30485"
                     /old_locus_tag="AI2623V1_5946"
     CDS             4302..4628
                     /locus_tag="LQ212_RS30485"
                     /old_locus_tag="AI2623V1_5946"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_208644579.1"
                     /translation="MKLLDSNEVCELLGISKSTLYRWCGVSEDFSGLGLSSGLPQANAL
                     NSRLAKATQKSLGWENMLVGRALQQKALGVEETPSDFPRPFKIGRSFKWKDAEIMAWLE
                     TRRV"
                     /name="helix-turn-helix domain-containing protein"
     Typing          5308..5413
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.393"
                     /coverage="100.0"
                     /evalue="1.64e-38"
     Typing          complement(4836..5341)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.095"
                     /coverage="99.0"
                     /evalue="1.71e-152"
     Typing          184..500
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.509"
                     /coverage="99.0"
                     /evalue="2.23e-59"
     Typing          497..1998
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="82.975"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ccaacatagt aagccagtat acactccgct agcgctacgt gactggttca gggctgcgcc
       61 ccgaaacccg ctaacagcca ctgacgcgcc tgcggcttgt ccaaccccgc gccgaccggg
      121 aaaggttttc ccgcccgtcc cggggttatc aggagactgt tttgtcagag aaacggaaca
      181 agatgctcac catgtgggtg acggaggatg agcacaggcg gctacttgag cgctgcgacg
      241 gcaggcagct ggcggcgtgg atgcggcaga cctgcctgga cgaaaagccg gctcgtaccg
      301 caaaacttcc ttcgatctcg ccggcgctgc tgcgccagct tgccggtatg ggcaacaacc
      361 tgaaccagat agcccgccgt gttaacgccg gcgtcggtac cggtcatgac cgggtgcaga
      421 ttgtggcggc gctgatggcc atcgatgccg ggcttgagcg gctgcggcac gccgttcttg
      481 agaaaggaac ggacgatgat cgttaaattt catccacgcg gtcgcggcgg tggcgccggg
      541 ccggtggact atctgctggg taaagaccgg cagcgtgaag gcgccagcgt cctgcagggg
      601 aagccggaag aagtccggga gctgattgac gcgtcgcctt acgtgaagaa atacacctcc
      661 ggcgtcctgt cgtttgcgga ggccgatctg cctcccggcc agcgggaaaa gctgatggcc
      721 agcttcgagc gggttctgat gcccggactc gataaagatc agtacagcat tctgtgggtg
      781 gagcacgcgg acaaggggcg tctggagctg aactttctga tccccaatac cgagctactg
      841 accggcaggc ggctccagcc gtactacgac cgcgccgacc gaccgcgcat cgatgcctgg
      901 cagaccatcg tgaacggcag actggggctg cacgacccga acgcaccgga aaaccgccgg
      961 gcgctggtca cgccggccgg actgccgaaa acgaagcagg aagccgcaga agccatcacc
     1021 cgtggactgc tgagcttagc ctcgtccggg gagctgaaaa gccgtcagga cgtcactgag
     1081 gctcttgaag gtgcaggttt tgaggtggtg cgtacaacga aaagcagtat cagcattgcc
     1141 gaccctgacg gggggcgaaa catccgactg aagggagcca tctatgagca gtcttttaac
     1201 gctggcgaag gacttagagc agcaatcgaa agcgcagcag aagagtaccg gcgagatgct
     1261 gaaagccgca ttcagcgagc acgagcagtc tgtcagagcg gaactgaacg caagcgcgag
     1321 gagaatcagc gacgccatca gcgcccacga gcagagtatg agcgaggcga tggagaaaaa
     1381 ccggcggagc gtgttgctga cggccgggag gacatggctc accatcctga tggtgtcagc
     1441 gctgctgatc gccacgagcg ggagcattct gtggtggcag ggacggcaga taaccgacaa
     1501 ttacacgcat cttcgtcagc aggaagatac cctggcgaaa atgaccgccc ggacgtgggg
     1561 agtgcgctat caggagagca acgacggccg gaggttcctt atcctgccgc cggggatgca
     1621 agccgaagcc atcccctacg acgggacgac ctggatccgc ctgaaacagg agtagcggaa
     1681 aatgacagag ctggaaaagc agttgctgag cgcattagag cagctacagc aggactactc
     1741 gcaaaggctg gacgaatggg agagcgcctt cgcggaatgg cggagcatgt gtggacttat
     1801 gcaacgggag aacgcggtgc tgaacgagcg cgtgtcggac ttgagcacgc aggtgctgag
     1861 tttaagcgag cagctgcgcc gcttgtccgg gaactgaatg ccatcgagga gaaggctgta
     1921 ctggagtatc agcgtcagaa cgagctggag ctgacgctcc gacagaagca gaagagtttc
     1981 gatggtccga agatgaggtg acagcccgca cgaagaaggg ctcatcgcgt tcctgctaaa
     2041 taggctgact accagaatgg tagtgactta tcccggagga agtgatgaaa attctcaacg
     2101 ttattgaagc cctgctgaac tgtttttacc tggtgatgga gctgtgtgag tttctggaga
     2161 ggcatttgcc ggtttttaag gcgttcgcgc tgattttagt gtgactttac gcgccatgca
     2221 tctggctgca tgactatgca gcagtgtaat atccagcggc tgcgtttttg gtgttttttc
     2281 gtcatgtctg tcgccacttt ctcgcgtctg gcaccggaaa cgcagccaac cccgtttcag
     2341 cggtgcgggc aacggatgtt atggtaaata ttggtgctct gggatgaagc gaaaataggc
     2401 tttttttcgc tgttttagcc tgttcaggaa cggcaagagt aaatatctgg gagcatgaag
     2461 ctcgttaacc tgaatggaga tcctgatgat ggacaaagat accaccaccc taaaacgcac
     2521 tttggctcat aatcgagcct taatcgatag tattaaccgc agtggcatag cctggtgcta
     2581 taacactgag attgtactcg ctgcttgtga ggcgattgaa gccgaactac aacggcgagg
     2641 atgtttgtaa caataagaaa acccgcatca gcgggttttt tagtctctga gacgcgctac
     2701 cgctaaatta tttttctctc tatccgccct ggcttgcccc ctacaacccc atggagcaca
     2761 aggagcacag ggagaaccat cgagcacacc gagcacaacg agtaccgcct tcctcttgta
     2821 aatcattatt aatcatataa ttaagaaact tcattgtaat atatattact ttttatgttt
     2881 ttaaatgtaa tgattattgc gatttagctt gtttttaact ctattttttc agatgagaac
     2941 aagctgccag tcatgaataa ctctttgatt ttattggttt tttttaataa attagtgtcc
     3001 atagacaaac gggagacgac tatgtccgca agagcaagaa aagcaggtaa gagaaatcag
     3061 tcagaacgac gtcaggattt gattgaaaaa ttgtgggaag acgacgaaat cgatacttgg
     3121 catcgacttg aaaatgatgg gtactcaaca gttccacgtt atttgccttt gataggcgat
     3181 ctcatggatg gtctgtcaaa aggatcacca ttatcaacaa cctacttggc tttatggttc
     3241 agggtttctg atgagggttt gattgaaata agagataaag cagcactggc ttttgaatca
     3301 gggttcgcta gtgaaagagg cgtaactaca tgggcaggga gaatgaaaaa gctaaaagaa
     3361 ctggggttca tatcctgtcg tgaaggcagc accggtgaat ttcattacgt gttaattgtt
     3421 cacccattag ttgcagtcaa aaagctgctt gatgaaggga ttatccctaa aggaaagact
     3481 tataacattt tgtcggagcg tgtaattgag gtgggagcct cttgggaggg ttaaatggcg
     3541 ggcacagtat ggcgtgacat aagaacggga gagactgttt ttcctatggg gcacctgcac
     3601 cctcagaggt gctgtgttga tgtaaacggt acttctgtag atatagaaat tagttttggt
     3661 tttcatgttt ttactgatga aaaacaaacc ggaatgctga tgaaatttaa ggaggaacag
     3721 aggttttttt gtagggaacg ctatgagggc agcaaaacta tcgttcacag aatacttaca
     3781 gcgatagaaa acggtgaata cattacagca tttatttcaa aggggcaggg gcagcggtat
     3841 taccatctta gccatcatga tgacttcatt ttgatggaaa taagaaagcc tcaagataga
     3901 aataattctt tgcgtattca tgttgttaca gcttacacgc ttgatgaatg ggggactgta
     3961 aataaaggac gtaacctgcg gtttagatat gtgctggaac agcgactgca gggaaagaag
     4021 attgtgtaaa aaacaaaaag cgcctaaggc gcctttgttt tttgcagaat ttcggtctgg
     4081 cctttcgtta tcccgctcac aggctgggag ggtgtgaccc ccggcatcag cacccctctc
     4141 tcgaggttcc ggtttgtgct gacaacatta gtatcctatt ccacatgttc gttgtcaaac
     4201 tagcgtactt tttggtgttc attgatgttt ataggttgtc atttaccatc tttggggtta
     4261 taagtgccta taggttttca ttgtttttta taggtgttca tatgaagttg cttgatagta
     4321 atgaagtgtg tgagctctta ggcatcagta agtccacttt gtatcgttgg tgcggggtgt
     4381 ctgaggattt ttctggcttg ggtctaagta gcggtcttcc tcaggctaac gctttgaata
     4441 gccggctggc taaggctact cagaaatctt taggctggga aaatatgctc gttgggaggg
     4501 cattacagca aaaagctctc ggtgtcgaag agacgccaag cgacttccct cgtcctttca
     4561 agatcggtcg ttcgtttaaa tggaaagacg ccgaaattat ggcttggctt gaaacgcgac
     4621 gcgtttgatt gatagatctt cttgagatca tttggatctc gtcgtagtct tttgtcctgt
     4681 aaacgaaaaa accaccctgg caggtggttt ttcgaaggtt atttaatcct ggcagattga
     4741 ataaccgtgg taacagtctt gtgcgagacg tgtcaccaaa tctgtccttt cagtgtagcc
     4801 tcactaaggc caccacttca agaactctga atacatctct cgcacatcct gtttaccaat
     4861 ggctaccgcc actggcgatt tttcgtgtct gttccgggtt ggactcaaga tgatagttac
     4921 cgggacaacg tggtagtcgg gctgaacggg gggttcttgc acacagccca gcttggagcg
     4981 aactgtctaa acggaacggg acgtggtgat ttaggtaaag cttccaccac aacacggatg
     5041 ccgcaggacg ggaacaggag agcgcaagag ggagccgcca gggggaaacg cctggtatct
     5101 ttaagtcctg tcgggtttcg ccaccactga tttgagcgtc agatttcgtg atgcttgtca
     5161 ggggggcgga gcctatggaa aaacggcttc gccgcggcct tatcgtttcc ctgttaagtc
     5221 tcttcctggc atctaccagg aaatttccgc cccgttcgta agccatttcc gctcgccgca
     5281 gccgaacgac cgagcgcagc gagtcagtga gcgaggaagc ggaatatatc ctgtatcgca
     5341 tattctgctg acgcaccggt gccgcctttt ttctcccgcc acatgaagca cttcactgat
     5401 attcgcatcc gtg
//
