LOCUS       NZ_OW849496             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens isolate 0 plasmid P5, complete sequence.
ACCESSION   NZ_OW849496
VERSION     NZ_OW849496.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962735
            Assembly: GCF_905232465.2
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 08:00:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,620
            CDSs (total)                      :: 5,490
            Genes (coding)                    :: 5,399
            CDSs (with protein)               :: 5,399
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 32 of 92
            Pseudo Genes (incomplete)         :: 62 of 92
            Pseudo Genes (internal stop)      :: 13 of 92
            Pseudo Genes (multiple problems)  :: 12 of 92
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849496.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /isolate="0"
                     /isolation_source="Complejo Asistencial Universitario de
                     Salamanca (Salamanca)"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="P5"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            complement(140..472)
                     /locus_tag="LQ146_RS28080"
     CDS             complement(140..472)
                     /locus_tag="LQ146_RS28080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(640..855)
                     /locus_tag="LQ146_RS28085"
                     /old_locus_tag="AI2617V1_5363"
     CDS             complement(640..855)
                     /locus_tag="LQ146_RS28085"
                     /old_locus_tag="AI2617V1_5363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(859..1344)
                     /locus_tag="LQ146_RS28090"
                     /old_locus_tag="AI2617V1_5364"
     CDS             complement(859..1344)
                     /locus_tag="LQ146_RS28090"
                     /old_locus_tag="AI2617V1_5364"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1379..2083)
                     /locus_tag="LQ146_RS28095"
                     /pseudo=""
     CDS             complement(<1379..2083)
                     /locus_tag="LQ146_RS28095"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2022..2345)
                     /locus_tag="LQ146_RS28100"
                     /old_locus_tag="AI2617V1_5365"
     CDS             complement(2022..2345)
                     /locus_tag="LQ146_RS28100"
                     /old_locus_tag="AI2617V1_5365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             complement(141..472)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2442..2633)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          2613..3096
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(543..2032)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agttggtagc tctgaattcc ggcaaacgaa ccaccgttgg tagcggtggt ttttttgttt
       61 acagggaaaa agattacgcg cagaaagaaa ggatctcaag gaaatccttt tgctttggcc
      121 aatatgcttc ggtaaaaagt taatgcgcag aagattttga aaaaatatta ataaccaaaa
      181 ctccaacgca aataaggaac attcctgcaa ttgcgggcca atcaagtttt tgaccgctaa
      241 ccaaccaacc agctaggctt attagtacaa ttcccgcacc agaccaaatt gcgtaagcaa
      301 taccggtagg tatattttcc aatgtttggg aaagcagata aaaggcagcg caataactta
      361 ttgcagttcc tacagacggc cacaggcgtg taaatccttc tgaatatttc ataaaggtgg
      421 tgcctatgac ttcagccaca atagcccctc ccaggaaaat atatgtattc ataaaaatac
      481 ctcatgttga aaaatttaaa tatctttaca taacaactaa ttaatagaac ccggcttatc
      541 atagcgaagg accatgatgc tgccactgcg atcgttccag ctccagcgct ttctggtgct
      601 gcaccgcccg ctcctgctgc cggtgagttt ctatcgcgtt cagcctttcg acaaccggcg
      661 cagctgctcg ctcaaactct gcacctgcct gctcaagacc gtgacgcgct cgttcagcgc
      721 cgcgttctcc cgttgaataa gaccagacat cgtccgccat tccgcgaagg cgttctccca
      781 ctcgtccagc cttttcgagt agtcctgctg tagctgctct aatgcgctca gcaactgttt
      841 ttccagctcc gtcatgtgct atttccccgc cagtatcatc cagctcgagt cctctccgaa
      901 ctgtcccgct tccgggttca ccctcacgca gcggcgtctc tgctcgccgc aggtcgagag
      961 ctgtacgccg ctgttcctct ctgacagcat ggcctgcgtg ctcttctgct cccggatggt
     1021 cgtatagttc tcgagtatct gctgcccctg ccaccacaga atgcccgcgc tcgacgctat
     1081 cagcagcgcg gagaccagaa cgatggtcag ccacgtctgg ctgaccatgc gcagcatccc
     1141 tttcgtgcgc tggctcatgg ctgaggacag cttccggtcg tggtcgagga tggcggcgct
     1201 gattctcttc tcgctttcgc tcagttccgc tctgacagac ttctcgtgct cgctgaatgc
     1261 ggctttcagc atctcgccgg tagtctgctg ctgcgctttc gatttctgct ctaagtcctt
     1321 cgccagcgtt aaaagactgt tcatagatgg ctcccttcag tcggatgttt cgccccccgt
     1381 ccgggtcggc aatgctgatg ctgctttttg tggtgcgcac cacctcaaaa cctgcgcttt
     1441 ccagcgcctc agtgacgtcc tgacgcgttt tcagctcccc ggatgaggca agggcaagca
     1501 ggccgctcgt aatcgcctgg gcggcttcct gcttcgcttc cggcagcgcg gaaggcgaga
     1561 ccagcacccg ccggttctcc ggcgcgttcg ggtcatgcag ccccagcctg ccgttcacta
     1621 tggtctgcca ggcatcgatg cgcggacggt cggcgcggtc gtaatacggc tgtagccgct
     1681 tgccggtcag aagctccgtg ttcgggatca ggaagttcag ctccagccgc cccttgtccc
     1741 ggtgctcaac ccacagcacg ctgtactggt ctttatcgag tccgggcatc agaacccgct
     1801 cgaaactcgc catcagcttt tcgcgctggc cgggcggtaa atcctgttcg gcaaaagaca
     1861 gaacgccgga agtgtacttt ttggcgtagg gcgaggcgtc gataagctcc cggacttcat
     1921 ccggcttccc ctgcagaacg ctggcgccgt cgcgctggcg atctttaccc agcagataat
     1981 cgaccggccc gccgccgccg ccgcgccccc gaggatgaaa cttaacgatc atcatcagca
     2041 cccttttcca gtacggcatg ccgcaaccgc tcgagtccgg catcgatggc catcagcgcg
     2101 gcgacaatct gcacgcggtc gtgtccgctt ccaccaccgg cgttaacctg gcgggcaatc
     2161 tggttaaggt tgttccccat gccggcaagc tgacgaagca gcgccggcga gatcgacgga
     2221 agtttgccgg cgcgtgcggg cttctcgtcc aggcacgtct gccgcatcca ggccgcgagt
     2281 tgcttaccct cgcagcgctc cagcagacgc cggtgctcgt cctcagtcac ccacatggtg
     2341 agcattttgc tgcgtttgtc tgccaatccg gcctcctgat aacgccggga cggacgggaa
     2401 atcttttccc ggtcggcacg gtgttggaca agccgcagac gcggcagtgg ttttagcggg
     2461 tttcggggcg cagccctgaa ccagtcacgt agcgctagcg gagtgtatac tggctaaaca
     2521 tgttatgacg gagtggtaat ttatgaaagt gcttcatgtg acaggggaaa aatgcggctg
     2581 ccgggcgtaa gtgcaaaatg caggtggtga tgaaatgacg cctcctcgct cactcggtcg
     2641 ctacgctcct gccgtgagac tgcggcgggc gttaccagct cacagattac gggataagca
     2701 aatgccgctc gaagcaggaa aggccaagaa aaggatgcgg agttgccgtt tttccatagg
     2761 ctccgccccc ctgacgagta tcacgaaaat gacgctcaaa tcagcggtgg cgaaacccga
     2821 tgcggcttaa agataccagg cgtttccccc tggtggctcc ctcgtgctcc cccgcattcc
     2881 tgcctttcgg tttaccggtg tcattccgct gttatggccg cggtttctca ttccacgcct
     2941 gaaactcggt tccgggtagg cagttcgctc caggatggac tgtatgcacg aaccccccgt
     3001 tcagtccgac taccacgccc gttccggtaa ctatcaactt gagtccaacc cggaaagaca
     3061 cgacaaatcg ccagtggcgg tagccattgg taactgggtt cacggagcag agattgtaga
     3121 gaatgcctac agagttcttg aagtgaaagc ctgagtgcgg ctacactgaa aggacagttt
     3181 aggtatctgc gctccgtgaa agccagttac catcggaaca aag
//
