LOCUS       NZ_OW849473             2789 bp    DNA     circular CON 01-APR-2024
DEFINITION  Klebsiella oxytoca isolate 325 plasmid P3, complete sequence.
ACCESSION   NZ_OW849473
VERSION     NZ_OW849473.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962775
            Assembly: GCF_905232115.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905232115.2-RS_2024_04_01
            Annotation Date                   :: 04/01/2024 06:18:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,767
            CDSs (total)                      :: 5,651
            Genes (coding)                    :: 5,555
            CDSs (with protein)               :: 5,555
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 40 of 96
            Pseudo Genes (incomplete)         :: 60 of 96
            Pseudo Genes (internal stop)      :: 15 of 96
            Pseudo Genes (multiple problems)  :: 16 of 96
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849473.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /isolate="325"
                     /isolation_source="Hospital Universitario Central de
                     Asturias (Oviedo)"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="P3"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            join(2760..2789,1..162)
                     /locus_tag="LQ213_RS28775"
                     /old_locus_tag="AI2699V1_5598"
     CDS             join(2760..2789,1..162)
                     /locus_tag="LQ213_RS28775"
                     /old_locus_tag="AI2699V1_5598"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_045358396.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFCTLTARLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            162..563
                     /locus_tag="LQ213_RS28780"
                     /old_locus_tag="AI2699V1_5599"
     CDS             162..563
                     /locus_tag="LQ213_RS28780"
                     /old_locus_tag="AI2699V1_5599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_024623230.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            1320..1517
                     /locus_tag="LQ213_RS28785"
                     /old_locus_tag="AI2699V1_5600"
     CDS             1320..1517
                     /locus_tag="LQ213_RS28785"
                     /old_locus_tag="AI2699V1_5600"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045358392.1"
                     /translation="MERVLGIYVVGIIVSAGFLFIQEVRNGRRRSYTEEGASMLVGIIC
                     AFLWPLVLIAYFFDKKNGKL"
                     /name="hypothetical protein"
     gene            1514..1933
                     /locus_tag="LQ213_RS28790"
     CDS             1514..1933
                     /locus_tag="LQ213_RS28790"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_128336926.1"
                     /translation="MKLSLFFISVITFLLAISPIAYSDNTIIPDRVYDPYRNSAVTPDG
                     TVYDRLTGGVLKASEHPQPNFGFPVQSSSDSCDTTYVKARTEDGRLLVTSDGVTLHVVD
                     NIVDVAHWQPNDELRVCGDRVINIDDNTSSSFTYN"
                     /name="hypothetical protein"
     Typing          complement(2028..2537)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.038"
                     /coverage="99.0"
                     /evalue="1.71e-152"
ORIGIN
        1 atggctaaat tcatccagaa tcagtctctg ctcctgctgg agaagcttaa cgagcttgat
       61 ctcgatgtcg aggccgacct ttgtgagaaa ctccacgatg atgcggagca tcttttctgt
      121 acactgaccg cgagactgga tgcattacag gatggtaact gatggccaga gtgtctatta
      181 gtgaggctgc ccgactgacg ggtaagagta gaacaacact gcacaggtta attaaagcag
      241 gtgacctgtc cacctgtagc ggtgaacgta atgcaaaaat ggtagatact tcagagcttt
      301 tacgtgtctt tggccccttt gaacaactga agggtgaaca ccattctgga caggtctctg
      361 aacagcgtga tacagcctct gctgaccaga gtgaacaggt gattcgtcat ctgaaacagg
      421 agattgaaca cctgaacacc ttacttttgt ccaaggattc gcacattgac agcctgaaac
      481 aggccatgct ccttcttgaa aatcaccagg caaaattaac tgaatccccg gcgccatggt
      541 ggaaattctg gaaaaaatcc tgaccccgtc atgcttcagt tttcctctcc ggccatccca
      601 gggagttcct gaaccttccc aaaaatcgtc agatctctga acgctcctca ccactaaaaa
      661 tacccacacc ccacgcaaaa ttaaaatttt gcagattcct tatttacaac aatgggttaa
      721 tgaaaaataa atgtgcggtg atgtgttaca aagtgcagat ccaagtcgtg gacgactcta
      781 tggcgaatcg ctgacgaatt gcccacgatt catatgtgaa tcacgcttta ttatcatatt
      841 gttatgatga atcgactctt gattcaattc atcactttgg gtgttttttg ctcatggtga
      901 ctcttgattc aattcacgat tcgaatcgcc ggtgaatcgt gtggtgagtc gtccggcgac
      961 ttgccataac gtgattgccg gccgtcgacg aacccgattc ctgaacgtgc tgaaaaccgg
     1021 ttttccggct gcgccggcaa cgcttcacgg ccacgcaata aattgcgtcc ccgttcaccg
     1081 ttttcggatg gaaagaacgc cggaaacagg acttactctg gctgaatggc gtgaattttc
     1141 gcgctatgca cttgcgtgca tactcatgca tgccttaaaa acagagcctg cgcgtttctg
     1201 gcgggttttc gggtggtttg ttgcctgttt taccggtttc ccctcagaaa cgccctgaga
     1261 ccgttttagc ggtgcgtaca agggatgtta tgtttaatct gataagaacg gaatgtttta
     1321 tggaaagggt attaggaatt tatgttgtcg gtattattgt gagtgccggt ttcctgttta
     1381 tccaagaagt taggaacggg aggcgcagaa gttacaccga agaaggtgcg tcaatgcttg
     1441 tcggcataat ttgtgcgttt ttgtggcctt tagttttaat tgcatatttt tttgataaaa
     1501 aaaatgggaa attatgaagt taagtctgtt tttcatctcg gtcattactt ttttattggc
     1561 tatatcaccg atagcatact cagataacac gattattcct gacagagtat atgatcctta
     1621 tagaaattcg gctgtaactc ctgatggcac cgtttatgac cgtctgacag gaggagtttt
     1681 gaaggcatca gagcaccctc aacctaattt tgggtttcct gttcaatcct catcggatag
     1741 ttgtgataca acgtatgtta aagctaggac agaagacggt aggcttttag tcacgagcga
     1801 cggagtaact ctgcatgtag ttgacaatat tgttgatgtt gctcactggc aaccaaatga
     1861 tgagcttaga gtctgtggcg atagagtaat caatattgat gacaatactt cctcctcgtt
     1921 cacatacaat taacctcttt tattcaaaga atatctatgg tgatgataga aagattgacg
     1981 agcatgtatg gggggatagc cgaagaaatg aaccaaagtt caaaaggatc ttcttgagat
     2041 cctttcagga gcgtcgtaat ctcttgctct gaaaacgaaa aaaccacctg gggaggtggt
     2101 ttttcgaagg ttcagtaagt tggggaactt ctgaaccgtg gtaacagggt gtacaagacc
     2161 gctgccacca aattcgtcct ttcagtttag ccgcagtctg gctctaactt caagaacttt
     2221 gcatcagtaa tctcttgtac accctctacc aatggctacc gccaatggcg atttgtcgtg
     2281 ccttttcggg ttggactcaa gacgatagtt accgaaaaga gcgtggtagt cggactgaac
     2341 ggggggttcg tgcatacagt ccagcttgga gcgaactgcc tacccggaac tgagtgtcag
     2401 gcgtggaatg agacaaacgc ggccataaca gcggaatgac accggtaaac cgaatggcag
     2461 gaacaggaga gcgcacgagg gagccatcag ggggaaacgc ctggtatctt tatagtcctg
     2521 tcgggtttcg ccaccactga tttgagcgtc agatttcgtg atgcttgtca ggggggcgga
     2581 gcctatggaa aaacggccgc tgtgctgcct tctccctctc cgagctgtct gctctatgtc
     2641 gttatgtgcg cgttgcgacc gctcgccgca gccgaacggc aggagcgtag cgactgagtg
     2701 agcgaggaag cggaaaagag atctgtctga cattgagcac tgacgctctg aggcccttta
     2761 tgacgaaaca acagaaaaca gcgctgaac
//
