LOCUS       NZ_OW849261             1335 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Citrobacter freundii isolate 18 plasmid P5, complete sequence.
ACCESSION   NZ_OW849261
VERSION     NZ_OW849261.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962746
            Assembly: GCF_905232555.2
KEYWORDS    RefSeq.
SOURCE      Citrobacter freundii
  ORGANISM  Citrobacter freundii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 16:11:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,416
            CDSs (total)                      :: 5,288
            Genes (coding)                    :: 5,184
            CDSs (with protein)               :: 5,184
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 32 of 104
            Pseudo Genes (incomplete)         :: 74 of 104
            Pseudo Genes (internal stop)      :: 19 of 104
            Pseudo Genes (multiple problems)  :: 19 of 104
            Pseudo Genes (short protein)      :: 1 of 104
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849261.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Citrobacter freundii"
                     /mol_type="genomic DNA"
                     /isolate="18"
                     /isolation_source="Hospital Universitario Central de
                     Asturias (Oviedo)"
                     /host="Homo sapiens"
                     /db_xref="taxon:546"
                     /plasmid="P5"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            complement(join(1159..1335,1..318))
                     /locus_tag="LQ173_RS27040"
     CDS             complement(join(1159..1335,1..318))
                     /locus_tag="LQ173_RS27040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="WP_045289185.1"
                     /translation="MLVSTETQKKQRLLDLQEKDRKNASESLQEQKNANFTQVYPLGWK
                     RLRELFRLNSGAAELYSMLAENIDGACGAVVADQAYLASLMGVSRQTISKYIKFLESQL
                     VLVKIPVAGKVCAYALNPHEVWKGYDNAKPHAAFLTKTLVNKDGDIQRRIMAMFAGKDD
                     E"
                     /name="HTH domain-containing protein"
     gene            complement(927..1166)
                     /locus_tag="LQ173_RS27045"
                     /old_locus_tag="AI2666V1_5276"
     CDS             complement(927..1166)
                     /locus_tag="LQ173_RS27045"
                     /old_locus_tag="AI2666V1_5276"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045289183.1"
                     /translation="MSEAADTLKSALRLITEMIDILENSDDAEAPQAFFEAYHEANGQL
                     NYAVYQALHPLLRAQRGQGSPSATAKRPDLDGLE"
                     /name="hypothetical protein"
     Typing          complement(719..799)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="93.0"
                     /evalue="3.98e-26"
ORIGIN
        1 tagcaccagt tgcgactcta agaatttgat atatttagat attgtctgcc ttgaaacacc
       61 catcaaactt gctagatatg cctgatctgc tacaactgca ccgcaggcac catcgatatt
      121 ttccgcaagc atagagtaca gctctgctgc ccctgaattg agcctgaaaa gctctctaag
      181 acgtttccag cccaaagggt atacctgggt gaagtttgcg ttcttttgct cttgtaggct
      241 ctctgaggcg tttttacggt ctttctcctg gagatctaac agccgttgtt ttttttgcgt
      301 ctctgtactg actaacatac aaccacccct gtttacatga tgtaacctag accgaacata
      361 acaccctcgt ttttggttta caagatgtcg cgttttggtt acatgctgtt aaaatctgta
      421 aaccccatag agctttacaa cgttgtaaac cctataagtt tacaacgtaa atatgaaata
      481 taataaaaaa caataacata caaacaattc ccttcttatc taaagatccc gatgctcgca
      541 ccgggatctt cggagtagct ccctcccttt ggtcgggcat ttttggggtc aaggttcgcc
      601 atcggcgacc gcgaagcggc ctgaccttga cgccaaaaaa gaccaaccac actacccggc
      661 ggtggttgtg atcacgcagt gagcgcaacc acctgccaga cgcttttggt tttgaccttt
      721 gcgggtttcg gggcgcagcc ctgaaccagt cacgtagcgc tagcggagtg tatactggct
      781 tactaagctt ttggcacggc agaacgcacc gattctgagg ggttttcgca gggatttctg
      841 atgttcggga aggtcaacgt caagggcggc ttaacaggtg gttggcctca cttcgtgaaa
      901 ccaaccacct tcgccaatgg tggggttcac tccaagccgt caaggtcagg ccgcttcgcg
      961 gtcgccgatg gcgaaccttg acccctttgc gctctcaaaa gcgggtgtag agcctgatat
     1021 accgcataat tcaattgacc attcgcttcg tggtaagcct caaaaaatgc ttggggagct
     1081 tctgcatcat cgctattttc aagtatgtcg atcatctctg taatcagtcg gagagccgat
     1141 tttagtgtgt ctgcggcttc actcatcgtc tttacctgca aacatcgcca tgattcttcg
     1201 ctggatgtca ccgtctttgt tgaccagtgt ttttgttagg aaagccgcat gaggcttggc
     1261 gttgtcatat cctttccaga cttcatgggg atttagtgca taggcgcaaa ctttgcctgc
     1321 aactggtatt ttaac
//
