LOCUS       NZ_OW849214             1335 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Citrobacter freundii isolate 18 plasmid P6, complete sequence.
ACCESSION   NZ_OW849214
VERSION     NZ_OW849214.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962748
            Assembly: GCF_905232605.2
KEYWORDS    RefSeq.
SOURCE      Citrobacter freundii
  ORGANISM  Citrobacter freundii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 16:07:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,482
            CDSs (total)                      :: 5,354
            Genes (coding)                    :: 5,238
            CDSs (with protein)               :: 5,238
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 33 of 116
            Pseudo Genes (incomplete)         :: 82 of 116
            Pseudo Genes (internal stop)      :: 23 of 116
            Pseudo Genes (multiple problems)  :: 20 of 116
            Pseudo Genes (short protein)      :: 1 of 116
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849214.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Citrobacter freundii"
                     /mol_type="genomic DNA"
                     /isolate="18"
                     /isolation_source="Hospital Universitario Central de
                     Asturias (Oviedo)"
                     /host="Homo sapiens"
                     /db_xref="taxon:546"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            complement(535..774)
                     /locus_tag="LQ122_RS27365"
                     /old_locus_tag="AI2668V1_5337"
     CDS             complement(535..774)
                     /locus_tag="LQ122_RS27365"
                     /old_locus_tag="AI2668V1_5337"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045289183.1"
                     /translation="MSEAADTLKSALRLITEMIDILENSDDAEAPQAFFEAYHEANGQL
                     NYAVYQALHPLLRAQRGQGSPSATAKRPDLDGLE"
                     /name="hypothetical protein"
     gene            complement(767..1261)
                     /locus_tag="LQ122_RS27370"
                     /old_locus_tag="AI2668V1_5338"
     CDS             complement(767..1261)
                     /locus_tag="LQ122_RS27370"
                     /old_locus_tag="AI2668V1_5338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="WP_045289185.1"
                     /translation="MLVSTETQKKQRLLDLQEKDRKNASESLQEQKNANFTQVYPLGWK
                     RLRELFRLNSGAAELYSMLAENIDGACGAVVADQAYLASLMGVSRQTISKYIKFLESQL
                     VLVKIPVAGKVCAYALNPHEVWKGYDNAKPHAAFLTKTLVNKDGDIQRRIMAMFAGKDD
                     E"
                     /name="HTH domain-containing protein"
     Typing          complement(327..407)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="93.0"
                     /evalue="3.98e-26"
ORIGIN
        1 ttttggttac atgctgttaa aatctgtaaa ccccatagag ctttacaacg ttgtaaaccc
       61 tataagttta caacgtaaat atgaaatata ataaaaaaca ataacataca aacaattccc
      121 ttcttatcta aagatcccga tgctcgcacc gggatcttcg gagtagctcc ctccctttgg
      181 tcgggcattt ttggggtcaa ggttcgccat cggcgaccgc gaagcggcct gaccttgacg
      241 ccaaaaaaga ccaaccacac tacccggcgg tggttgtgat cacgcagtga gcgcaaccac
      301 ctgccagacg cttttggttt tgacctttgc gggtttcggg gcgcagccct gaaccagtca
      361 cgtagcgcta gcggagtgta tactggctta ctaagctttt ggcacggcag aacgcaccga
      421 ttctgagggg ttttcgcagg gatttctgat gttcgggaag gtcaacgtca agggcggctt
      481 aacaggtggt tggcctcact tcgtgaaacc aaccaccttc gccaatggtg gggttcactc
      541 caagccgtca aggtcaggcc gcttcgcggt cgccgatggc gaaccttgac ccctttgcgc
      601 tctcaaaagc gggtgtagag cctgatatac cgcataattc aattgaccat tcgcttcgtg
      661 gtaagcctca aaaaatgctt ggggagcttc tgcatcatcg ctattttcaa gtatgtcgat
      721 catctctgta atcagtcgga gagccgattt tagtgtgtct gcggcttcac tcatcgtctt
      781 tacctgcaaa catcgccatg attcttcgct ggatgtcacc gtctttgttg accagtgttt
      841 ttgttaggaa agccgcatga ggcttggcgt tgtcatatcc tttccagact tcatggggat
      901 ttagtgcata ggcgcaaact ttgcctgcaa ctggtatttt aactagcacc agttgcgact
      961 ctaagaattt gatatattta gatattgtct gccttgaaac acccatcaaa cttgctagat
     1021 atgcctgatc tgctacaact gcaccgcagg caccatcgat attttccgca agcatagagt
     1081 acagctctgc tgcccctgaa ttgagcctga aaagctctct aagacgtttc cagcccaaag
     1141 ggtatacctg ggtgaagttt gcgttctttt gctcttgtag gctctctgag gcgtttttac
     1201 ggtctttctc ctggagatct aacagccgtt gttttttttg cgtctctgta ctgactaaca
     1261 tacaaccacc cctgtttaca tgatgtaacc tagaccgaac ataacaccct cgtttttggt
     1321 ttacaagatg tcgcg
//
