LOCUS       NZ_OW849161             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens isolate 0 plasmid P6, complete sequence.
ACCESSION   NZ_OW849161
VERSION     NZ_OW849161.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962736
            Assembly: GCF_905232415.2
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:57:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,348
            CDSs (total)                      :: 5,217
            Genes (coding)                    :: 5,135
            CDSs (with protein)               :: 5,135
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 53 of 83
            Pseudo Genes (internal stop)      :: 14 of 83
            Pseudo Genes (multiple problems)  :: 10 of 83
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849161.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /isolate="0"
                     /isolation_source="Complejo Asistencial Universitario de
                     Salamanca (Salamanca)"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="P6"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            585..1070
                     /locus_tag="LQ123_RS26725"
                     /old_locus_tag="AI2618V1_5101"
     CDS             585..1070
                     /locus_tag="LQ123_RS26725"
                     /old_locus_tag="AI2618V1_5101"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            1074..1289
                     /locus_tag="LQ123_RS26730"
                     /old_locus_tag="AI2618V1_5102"
     CDS             1074..1289
                     /locus_tag="LQ123_RS26730"
                     /old_locus_tag="AI2618V1_5102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1457..1789
                     /locus_tag="LQ123_RS26735"
     CDS             1457..1789
                     /locus_tag="LQ123_RS26735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            2807..3130
                     /locus_tag="LQ123_RS26740"
                     /old_locus_tag="AI2618V1_5104"
     CDS             2807..3130
                     /locus_tag="LQ123_RS26740"
                     /old_locus_tag="AI2618V1_5104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             1458..1789
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          2520..2711
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          complement(2057..2537)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.867"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          3..1387
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.595"
                     /coverage="93.0"
                     /evalue="0.0"
     Typing          2808..3127
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.196"
                     /coverage="100.0"
                     /evalue="8.510000000000001e-64"
ORIGIN
        1 gaagccggat gaagtccggg agcttatcga cgcctcgccc tacgccaaaa agtacacttc
       61 cggcgttctg tcttttgccg aacaggattt accgcccggc cagcgcgaaa agctgatggc
      121 gagtttcgag cgggttctga tgcccggact cgataaagac cagtacagcg tgctgtgggt
      181 tgagcaccgg gacaaggggc ggctggagct gaacttcctg atcccgaaca cggagcttct
      241 gaccggcaag cggctacagc cgtattacga ccgcgccgac cgtccgcgca tcgatgcctg
      301 gcagaccata gtgaacggca ggctggggct gcatgacccg aacgcgccgg agaaccggcg
      361 ggtgctggtc tcgccttccg cgctgccgga agcgaagcag gaagccgccc aggcgattac
      421 gagcggcctg cttgcccttg cctcatccgg ggagctgaaa acgcgtcagg acgtcactga
      481 ggcgctggaa agcgcaggtt ttgaggtggt gcgcaccaca aaaagcagca tcagcattgc
      541 cgacccggac ggggggcgaa acatccgact gaagggagcc atctatgaac agtcttttaa
      601 cgctggcgaa ggacttagag cagaaatcga aagcgcagca gcagactacc ggcgagatgc
      661 tgaaagccgc attcagcgag cacgagaagt ctgtcagagc ggaactgagc gaaagcgaga
      721 agagaatcag cgccgccatc ctcgaccacg accggaagct gtcctcagcc atgagccagc
      781 gcacgaaagg gatgctgcgc atggtcagcc agacgtggct gaccatcgtt ctggtctccg
      841 cgctgctgat agcgtcgagc gcgggcattc tgtggtggca ggggcagcag atactcgaga
      901 actatacgac catccgggag cagaagagca cgcaggccat gctgtcagag aggaacagcg
      961 gcgtacagct ctcgacctgc ggcgagcaga gacgccgctg cgtgagggtg aacccggaag
     1021 cgggacagtt cggagaggac tcgagctgga tgatactggc ggggaaatag cacatgacgg
     1081 agctggaaaa acagttgctg agcgcattag agcagctaca gcaggactac tcgaaaaggc
     1141 tggacgagtg ggagaacgcc ttcgcggaat ggcggacgat gtctggtctt attcaacggg
     1201 agaacgcggc gctgaacgag cgcgtcacgg tcttgagcag gcaggtgcag agtttgagcg
     1261 agcagctgcg ccggttgtcg aaaggctgaa cgcgatagaa actcaccggc agcaggagcg
     1321 ggcggtgcag caccagaaag cgctggagct ggaacgatcg cagtggcagc atcatggtcc
     1381 ttcgctatga taagccgggt tctattaatt agttgttatg taaagatatt taaatttttc
     1441 aacatgaggt atttttatga atacatatat tttcctggga ggggctattg tggctgaagt
     1501 cataggcacc acctttatga aatattcaga aggatttaca cgcctgtggc cgtctgtagg
     1561 aactgcaata agttattgcg ctgcctttta tctgctttcc caaacattgg aaaatatacc
     1621 taccggtatt gcttacgcaa tttggtctgg tgcgggaatt gtactaataa gcctagctgg
     1681 ttggttggtt agcggtcaaa aacttgattg gcccgcaatt gcaggaatgt tccttatttg
     1741 cgttggagtt ttggttatta atattttttc aaaatcttct gcgcattaac tttttaccga
     1801 agcatattgg ccaaagcaaa aggatttcct tgagatcctt tctttctgcg cgtaatcttt
     1861 ttccctgtaa acaaaaaaac caccgctacc aacggtggtt cgtttgccgg aattcagagc
     1921 taccaactct ttgttccgat ggtaactggc tttcacggag cgcagatacc taaactgtcc
     1981 tttcagtgta gccgcactca ggctttcact tcaagaactc tgtaggcatt ctctacaatc
     2041 tctgctccgt gaacccagtt accaatggct accgccactg gcgatttgtc gtgtctttcc
     2101 gggttggact caagttgata gttaccggaa cgggcgtggt agtcggactg aacggggggt
     2161 tcgtgcatac agtccatcct ggagcgaact gcctacccgg aaccgagttt caggcgtgga
     2221 atgagaaacc gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaatgcgg
     2281 gggagcacga gggagccacc agggggaaac gcctggtatc tttaagccgc atcgggtttc
     2341 gccaccgctg atttgagcgt cattttcgtg atactcgtca ggggggcgga gcctatggaa
     2401 aaacggcaac tccgcatcct tttcttggcc tttcctgctt cgagcggcat ttgcttatcc
     2461 cgtaatctgt gagctggtaa cgcccgccgc agtctcacgg caggagcgta gcgaccgagt
     2521 gagcgaggag gcgtcatttc atcaccacct gcattttgca cttacgcccg gcagccgcat
     2581 ttttcccctg tcacatgaag cactttcata aattaccact ccgtcataac atgtttagcc
     2641 agtatacact ccgctagcgc tacgtgactg gttcagggct gcgccccgaa acccgctaaa
     2701 accactgccg cgtctgcggc ttgtccaaca ccgtgccgac cgggaaaaga tttcccgtcc
     2761 gtcccggcgt tatcaggagg ccggattggc agacaaacgc agcaaaatgc tcaccatgtg
     2821 ggtgactgag gacgagcacc ggcgtctgct ggagcgctgc gagggtaagc aactcgcggc
     2881 ctggatgcgg cagacgtgcc tggacgagaa gcccgcacgc gccggcaaac ttccgtcgat
     2941 ctcgccggcg ctgcttcgtc agcttgccgg catggggaac aaccttaacc agattgcccg
     3001 ccaggttaac gccggtggtg gaagcggaca cgaccgcgtg cagattgtcg ccgcgctgat
     3061 ggccatcgat gccggactcg agcggttgcg gcatgccgta ctggaaaagg gtgctgatga
     3121 tgatcgttaa gtttcatcct cgggggcgcg gcggcggcgg cgggccggtc gattatctgc
     3181 tgggtaaaga tcgccagcgc gacggcgcca gcgttctgca ggg
//
