LOCUS       NZ_OW849160             3696 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens isolate 0 plasmid P5, complete sequence.
ACCESSION   NZ_OW849160
VERSION     NZ_OW849160.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962736
            Assembly: GCF_905232415.2
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:57:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,348
            CDSs (total)                      :: 5,217
            Genes (coding)                    :: 5,135
            CDSs (with protein)               :: 5,135
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 53 of 83
            Pseudo Genes (internal stop)      :: 14 of 83
            Pseudo Genes (multiple problems)  :: 10 of 83
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849160.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /isolate="0"
                     /isolation_source="Complejo Asistencial Universitario de
                     Salamanca (Salamanca)"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="P5"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            join(3546..3696,1..206)
                     /locus_tag="LQ123_RS26700"
     CDS             join(3546..3696,1..206)
                     /locus_tag="LQ123_RS26700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873324.1"
                     /translation="MAWHSVSQAQALTGKSRRTLYRDMAAGRVSWRNNADGRRELETTE
                     LLRVYGELQPDGTDARHTLSQPVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPTPA
                     EPAIVKRWWQRWRR"
                     /name="hypothetical protein"
     gene            947..1465
                     /locus_tag="LQ123_RS26705"
                     /old_locus_tag="AI2618V1_5100"
     CDS             947..1465
                     /locus_tag="LQ123_RS26705"
                     /old_locus_tag="AI2618V1_5100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013318635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_038873321.1"
                     /translation="MQKVTDLYPPEIASHNLHNHFAGNEVMLELIKKLNKTSLCTFAAL
                     CDGNVVTTSGYNIMADLCVNRASAVAHSLKQKYLPVTARTISTKADVGGAVKQVAFYLD
                     ESDLARLKSEPEKMMKECERNLNSQKRSNAQKEMIRLYKEFGESGVLELLRNVSGANDS
                     PPSDEKKAS"
                     /name="hypothetical protein"
     gene            complement(1676..2092)
                     /locus_tag="LQ123_RS26710"
     CDS             complement(1676..2092)
                     /locus_tag="LQ123_RS26710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="WP_038873320.1"
                     /translation="MYIPVVIHKDADTDYGVTVPDIPGCYSAGVTVDEALQNAKEAILF
                     HIEGLIEDGVYHEFKFSDIEALKTYDEYHDGMFSLVDVDLSALTDEATRFNVSWPKYVL
                     TILDGSLKETHETRSGYLAKLVLQDLRRNRSFQD"
                     /name="type II toxin-antitoxin system HicB family
                     antitoxin"
     gene            complement(2181..2369)
                     /locus_tag="LQ123_RS26715"
     CDS             complement(2181..2369)
                     /locus_tag="LQ123_RS26715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008889005.1"
                     /GO_function="GO:0003729 - mRNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family toxin"
                     /protein_id="WP_071605287.1"
                     /translation="MSSSEDIIRRIQLDGWEKVAQKGSHVQFKHPTKKGRVTIPHPNKD
                     LPKGTVKSILKQAGIAE"
                     /name="type II toxin-antitoxin system HicA family toxin"
     gene            complement(2739..2870)
                     /locus_tag="LQ123_RS26720"
     CDS             complement(2739..2870)
                     /locus_tag="LQ123_RS26720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071605494.1"
                     /translation="MHEPPVQSDHCTLSGNYRLESNPERHDKAPLAAAVGRGVQEIN"
                     /name="replication initiation protein"
     Typing          complement(2763..3107)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.376"
                     /coverage="80.0"
                     /evalue="2.97e-154"
ORIGIN
        1 gcgaactgca gcctgatggc acggatgcgc ggcacacgct gtcacagccc gttggcacag
       61 aagatcaggc ggtattactc gccgaaatac gcgcattacg gcaggaggtc gccgatttga
      121 aagcggcggt cttgcgtctg gagcaccatc ctaccccggc ggagccggcg atcgtcaaac
      181 ggtggtggca gcgctggcgc cgttgatccc cactgccgcg ccgccggctt ggccaacgct
      241 tcacggccgc gcaataaatt gcccgcccgt tcaccgtttc tcacattggc agaacggcaa
      301 aaacacgcga ttcggtcgcg tttctctctg aacctggtct ctgcgtgctg ggttgcataa
      361 tcattcatgc cgccaaacgg cctgtacgcc attttgcggg ctttttttgc ggagaagtga
      421 gggggtttta ctgctttggt tgttcaagcg cacatagggc gtctgaggcg gtgcgggaaa
      481 cggatgttat ggtaaattgt gaaattagct gagatttttt tgtcaacttt ttgctgtatg
      541 tttaaacatg agttctacgc tgacagtact gttgctaatt tcatctgcca gactggtaat
      601 tcccttgtaa atcaatcgcg agagatcagt aaaaaagcta tgtgtgtgct tatggaatag
      661 ggtagaataa gaaattctga tgatcgtgag gttgtcagtg aaaaacgagg cagctatcag
      721 atcttcggcc tgagaaacta aggattctga tagctgccgg tgactcggtt cgtgaaaact
      781 gaatctacct gatcaacaaa cgcccgatta gggcgtttgt caagtggtgc tgcattatgt
      841 agtaacttgg taccgacttg ccaggtattt ttcacagttt ttgatgcgcg aaggctcata
      901 cggacaccgt cacctgttat ttattctctg taaacaggtg ctataaatgc aaaaagtaac
      961 cgatttgtat cctcctgaaa ttgctagtca taatcttcat aatcacttcg ctggcaacga
     1021 agtgatgctg gagttaatca agaaattaaa taaaaccagt ttgtgtactt ttgcagctct
     1081 ctgtgatggt aacgtggtaa ccacttccgg ctataacatt atggccgatc tgtgtgttaa
     1141 ccgtgcgtca gctgtggctc attctcttaa acaaaaatat cttccagtca ccgctagaac
     1201 gatatcgact aaggctgatg ttggtggtgc agtaaaacag gttgctttct atcttgacga
     1261 gagcgatctt gcaagactga agtctgaacc tgaaaagatg atgaaagagt gcgaacgtaa
     1321 cctgaatagc cagaagcgct ccaatgctca gaaggaaatg attaggctat acaaagagtt
     1381 tggtgagtca ggtgttttgg aacttttacg taatgtttct ggtgctaatg attcaccgcc
     1441 gtccgatgaa aagaaagcaa gttgaatgaa tgaataaaaa aaggctagat ttctctagcc
     1501 ttttttctta cttactacca gcggagtctt ttctgttgct tctcacatga gctctaacag
     1561 ttattacttc accactggat aaagtctttt ggtatgacgc aatcctattg aattttctac
     1621 ctttactgtc ttttgccatg tctgttcctc ctatgagttc tatccttgat tcacattaat
     1681 cctggaatga tctatttcta cgcaagtctt gaagcactaa ttttgctaag taacctgaac
     1741 gagtctcatg agtttctttt aatgaaccat ctaaaatggt taatacgtat tttggccagc
     1801 taacattaaa tcttgtcgct tcatctgtta atgcgctaag atctacgtca accaacgaaa
     1861 acataccatc atgatattca tcataagttt ttaaggcttc tatatcgctg aatttaaatt
     1921 catgatatac gccatcctca attaatcctt ctatatgaaa aagaatcgcc tctttagcat
     1981 tttgcaatgc ttcatctacg gttacacctg ctgagtaaca tccaggaata tcaggaacag
     2041 ttacgccata atccgtatcg gcatccttat ggatcactac cggaatgtac atggttaact
     2101 cctaatctct ctcattactc attaaacgta gtaagtcatt ctgaactcta ccgggaaggc
     2161 aaagccttcc cggtgaggaa tcattcagct atcccggcct gcttaaggat actttttaca
     2221 gttcccttag gcaggtcttt gttcgggtga ggaatggtta cgcgaccctt tttagtagga
     2281 tgtttaaact gcacatgact acctttttgg gccacttttt cccatccatc gagctgaatt
     2341 cttcggatta tgtcttcaga agaactcatg ctacgtacct tatggttgtg ctctgctttt
     2401 gcggagctgg gttcctttcg tctccatcaa aagcggaaac tttcgacaat aatacacacg
     2461 attacacacg gtgtcaatct ctgtgtgtaa tcgtgtgtat tcaagcggta aggaaagttg
     2521 ctttgtttct gcttgattga atgattttct tgagatctat ctgtgctgtc ggtaatcttc
     2581 ctttgaaacg aaaaaaccgc ctggggaggc ggttttttcg agggttcagt aagttgggga
     2641 acttctgaac cgtggtaaca gggtgtacaa gaccgctgaa accaaattct gtcctttcag
     2701 tgtagccgca gttgggttgc cacttcaaga actctcattc agttaatctc ttgtacacct
     2761 ctaccaacgg ctgctgccag tggcgctttg tcgtgtcttt ccgggttgga ctcaagtcga
     2821 tagttaccgg ataaggtgca gtggtcggac tgaacggggg gttcgtgcat acagtccagc
     2881 ttggagcgaa ctgccttccc ggaaccgagt gtcaggcgtg gaatgagata aacgcggcca
     2941 taacagcgga atgacatcgg taaaccgaaa ggcaggaaca ggagagcgca cgagggagcc
     3001 atcaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc actgatttga
     3061 gcgtcagata ttgtgatgct tgtcaggggg gcggagccta tggaaaaaca gcccgctggg
     3121 ctgtggcctt ttcccgtctt tctgcatgct cttactccgt catccttccc tttttatccc
     3181 caccgctcgc cgcagtgttg actagcgtag tctgtcaacg cgaggaagcg gaagtgcatt
     3241 tgactgatat gtcgcacggt catcgcgggg cttttgttga cgatgcaaga taggcaaagt
     3301 gttcccgttt gacgtcattg catgccttca tccggtgaca cgttgcctac cctgccggtg
     3361 gctctcgtgc gggacaggat atgttttgta gcaccgccgt gggcgacgcg tccaaaacga
     3421 gggtgacgga caggaaatgt gttgtcatta ccgccggtgt tcctggcttt gacaacacgc
     3481 aggtcagggc gaagccccga caccccgaat ctcccctata ctgtgccaaa aaaaaggagg
     3541 tctctatggc atggcacagt gtgtcgcagg cacaggcatt gaccggaaaa agtcggcgga
     3601 cgctctaccg tgatatggcg gcaggccgcg tatcatggcg caataatgcc gatggcaggc
     3661 gggagttaga aactacggaa ttgctgcgcg tgtacg
//
