LOCUS       NZ_OW849114             2912 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens isolate 0 plasmid P3, complete sequence.
ACCESSION   NZ_OW849114
VERSION     NZ_OW849114.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962734
            Assembly: GCF_905232425.2
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:46:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,984
            CDSs (total)                      :: 4,863
            Genes (coding)                    :: 4,826
            CDSs (with protein)               :: 4,826
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 13 of 37
            Pseudo Genes (incomplete)         :: 28 of 37
            Pseudo Genes (internal stop)      :: 6 of 37
            Pseudo Genes (multiple problems)  :: 9 of 37
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849114.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2912
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /isolate="0"
                     /isolation_source="Complejo Asistencial Universitario de
                     Salamanca (Salamanca)"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="P3"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            complement(join(2577..2912,1..117))
                     /locus_tag="LQ078_RS24910"
     CDS             complement(join(2577..2912,1..117))
                     /locus_tag="LQ078_RS24910"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_250327169.1"
                     /translation="MPTFTQSGTGKFDYWLIDGVKSFSKIPANTLPSITVDMPIRLQVG
                     NGYFGSTHITARHGKWLQRYQPDGCVATFVHKKLSTSGKILLLEEQDKIGLALRLNPDS
                     ALILKNIGDFFSITTIYYKRSGLQGDEVGRYTGSSWATSPFIDRKR"
                     /name="hypothetical protein"
     gene            complement(127..558)
                     /locus_tag="LQ078_RS24915"
     CDS             complement(127..558)
                     /locus_tag="LQ078_RS24915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283459.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_230116474.1"
                     /translation="MKAKTEPLEKKWGERSMLMGWTAIPTSLLFLQAELSISPLGFNLL
                     MNLVSHWWETTEHPYPSQESMAKRMGVSKRSIQREITTLIELGLLDKQPNKAGSKKFKG
                     RNTYDLSKLVQALNEKTPDKISSFKRYKKNGESLDSELE"
                     /name="helix-turn-helix domain-containing protein"
     gene            1919..2275
                     /locus_tag="LQ078_RS24920"
                     /old_locus_tag="AI2616V1_4749"
     CDS             1919..2275
                     /locus_tag="LQ078_RS24920"
                     /old_locus_tag="AI2616V1_4749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019454714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entry exclusion protein 1"
                     /protein_id="WP_230116475.1"
                     /translation="MAWHSVAQAQELTGKSRRTLYRDMAAGRVSWRHNADGKRELETTE
                     LLRVYGDLQHAGTDVRHTVSHSVGTEDQAVLLAEIRALRQEVADLKAAVLRLEHHPAPA
                     EPAIVKRWWQRWRR"
                     /name="entry exclusion protein 1"
     Typing          complement(954..1425)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.858"
                     /coverage="92.0"
                     /evalue="1.72e-147"
ORIGIN
        1 cggcatatct acggtaatag atggcagtgt attagctggt atttttgaaa aagacttaac
       61 tccatctata agccaatagt caaacttacc agtcccagat tgcgtgaatg tcggcatttt
      121 ctaatgttac tccagctctg aatctagtga ttctccattt tttttatatc gtttgaaact
      181 gcttattttg tcaggcgttt tttcattaag ggcttgaaca agtttgctca agtcataagt
      241 gttccgacct ttaaatttct tacttccagc cttgttaggc tgtttgtcga gtaggccaag
      301 ttctatcaaa gtagtgatct cccgttggat agaacgcttc gacaccccca ttctttttgc
      361 catcgattct tgtgaagggt aagggtgctc tgtcgtttcc caccaatgag aaacaaggtt
      421 catcaacaaa ttaaacccca aagggctgat tgatagttct gcttgcagga aaagcagcga
      481 tgttggtatc gctgtccacc ccataagcat gcttcgttca ccccactttt tctcaagtgg
      541 ctctgtcttc gctttcattg caatcctcgt ttttaaattt gtagcgacac caagaacaca
      601 ccagcatcat tataacataa tgatgctggt gtgttcttgg ttatatttat atatgtatat
      661 acatatgtat agacatattg tcgcctttat ttgatgctat tttgtcacca tacttgctat
      721 gagtcttaca gaagacgatt tgtccgtcat ggcgatgtaa tggcgaggca acatgcgctg
      781 atagtggatc gccctgcatt ttgcagccac ttgagtgggc tccttcacag agaaggatga
      841 tgaatctgag cacagacatc acgtacgcca ctcggactca caaaaaaagc tgcctatggc
      901 agcttttttt gtttttatct tcttgattga caagaaggta agcaaaaatg tagtctcgga
      961 aacgaaaaaa ccacccggca aggtggtttt tcgaaggttc attaaaccgg caagtttatg
     1021 aaccgtggta acagggtgta caagaccgct gccaccaaat tcgtccttcc agtttagccg
     1081 tagttgggct gatacttcaa gaactctgca tcagtaatct cttgtacacc ctcttaccgt
     1141 tggctgctgc cagtggcgtt aagtcgtgtc tttctggttt ggaatcaagt cgaaagttac
     1201 cggaacaggc gcagtggtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc
     1261 gaactgcctt cccggaatcg agtgtcaggc gtggaatgag agaaccgcgg ccataacagc
     1321 ggagtgacac cggcaaaccg aaaggcagga acaggagagc gcacgaggga gccatcaggg
     1381 ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc accactgatt tgagcgtcag
     1441 attttgtgat gcttgtcagg ggggcggagc ctatggaaaa acagcctggc gggctgtgcc
     1501 cttttcccgt tttctacact cctctcattc cttcatcttt ccctttttat ccccaccgct
     1561 cgccgcagtg ttgactagcg cagtctgtca acgcgaggaa gcggaagtgc atctgaagct
     1621 gatgtgttaa acggtcatcg cggggctttt gttgacgatg caagataggc aactagttcc
     1681 cgtttgacgt cattacatgc cttcctccgg tgacgtgttg ccgaccctgc cggtggctct
     1741 catgcaggac aggatatgtt ttgtagcacc gccgttggcg acgcgtccaa aacgagggtg
     1801 atggacagga aatgtgttgt cattaccgcc ggtgttcctg gctttgacaa cacgaaggtc
     1861 agggcaaagc cccgacaccc ctaatctccc ctatactgtg ccaaaaaagg aggtctcgat
     1921 ggcatggcac agtgtggcgc aggcgcagga attgaccgga aaaagtcggc ggacgctcta
     1981 ccgagatatg gcggcaggcc gcgtatcatg gcgacataat gccgatggta agcgggagtt
     2041 agaaaccacg gaattgttgc gcgtgtacgg cgatctgcaa catgcaggca cggatgtgcg
     2101 gcacacggtg tcacactctg ttggcacaga agatcaggct gtattactcg ccgaaatacg
     2161 cgcattacgg caggaggtcg ccgatctgaa agcggcggtc ttgcgtctgg agcaccaccc
     2221 ggccccggcg gagccggcga tcgtcaaacg gtggtggcag cgctggcgcc gttgatcctc
     2281 actgccgcgc cgccggcttg gccaacgctt cacggccgcg caatgaattg cccgcccgtt
     2341 caccgtttct aacattggca gaacggtaaa aacacgcgat tcggttcgcg tttcccctta
     2401 aacctgaact ctgcccaccg gggtgcataa ccattcactc tgccaaacgg cctgtatgcc
     2461 attttgcggg cgttttagcg gatatgcgag ggggttttgt ggctttcgcc tcagaagtgc
     2521 gctgagggcg tctgaggcgg tgcgggaaac ggatgttatg tttaatctag gtgcgcttat
     2581 cgttttctat cgataaatgg agacgtggcc caggatgagc cagtatacct cccaacctca
     2641 tctccctgaa gtccgcttcg tttgtaatat attgttgtta tggagaaaaa atcacctata
     2701 tttttcaata tcagggctga atccgggttt aatctaagag ctaaacctat tttatcttgc
     2761 tcttctaaaa gcaatatttt tccacttgta ctgagctttt tatggacgaa tgttgctacg
     2821 cacccatcag gttgatagcg ttgaagccac ttaccatgcc tggctgttat atgcgttgag
     2881 ccgaagtaac catttcctac ttgtaaacgg at
//
