LOCUS       NZ_OW849113             3223 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Serratia marcescens isolate 0 plasmid P2, complete sequence.
ACCESSION   NZ_OW849113
VERSION     NZ_OW849113.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7962734
            Assembly: GCF_905232425.2
KEYWORDS    RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Alioto,T., Alioto,T. and Gomez Garrido,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2022) CNAG-CRG, CNAG, Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/02/2023 07:46:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,984
            CDSs (total)                      :: 4,863
            Genes (coding)                    :: 4,826
            CDSs (with protein)               :: 4,826
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 13 of 37
            Pseudo Genes (incomplete)         :: 28 of 37
            Pseudo Genes (internal stop)      :: 6 of 37
            Pseudo Genes (multiple problems)  :: 9 of 37
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OW849113.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /isolate="0"
                     /isolation_source="Complejo Asistencial Universitario de
                     Salamanca (Salamanca)"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="P2"
                     /geo_loc_name="Spain"
                     /collection_date="2018"
     gene            534..857
                     /locus_tag="LQ078_RS24885"
                     /old_locus_tag="AI2616V1_4745"
     CDS             534..857
                     /locus_tag="LQ078_RS24885"
                     /old_locus_tag="AI2616V1_4745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1066..>1500
                     /locus_tag="LQ078_RS24890"
                     /pseudo=""
     CDS             1066..>1500
                     /locus_tag="LQ078_RS24890"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1535..2020
                     /locus_tag="LQ078_RS24895"
                     /old_locus_tag="AI2616V1_4746"
     CDS             1535..2020
                     /locus_tag="LQ078_RS24895"
                     /old_locus_tag="AI2616V1_4746"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            2024..2239
                     /locus_tag="LQ078_RS24900"
                     /old_locus_tag="AI2616V1_4747"
     CDS             2024..2239
                     /locus_tag="LQ078_RS24900"
                     /old_locus_tag="AI2616V1_4747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2407..2739
                     /locus_tag="LQ078_RS24905"
     CDS             2407..2739
                     /locus_tag="LQ078_RS24905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     ARG             2408..2739
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          247..438
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          complement(13..264)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.625"
                     /coverage="91.0"
                     /evalue="1.4999999999999999e-53"
     Typing          complement(2774..3223)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.878"
                     /coverage="85.0"
                     /evalue="1.11e-99"
     Typing          848..2337
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aatgcggggg agcacgaggg agccaccagg gggaaacgcc tggtatcttt aagccgcatc
       61 gggtttcgcc accgctgatt tgagcgtcat tttcgtgata ctcgtcaggg gggcggagcc
      121 tatggaaaaa cggcaactcc gcatcctttt cttggccttt cctgcttcga gcggcatttg
      181 cttatcccgt aatctgtgag ctggtaacgc ccgccgcagt ctcacggcag gagcgtagcg
      241 accgagtgag cgaggaggcg tcatttcatc accacctgca ttttgcactt acgcccggca
      301 gccgcatttt tcccctgtca catgaagcac tttcataaat tgccactccg tcataacatg
      361 tttagccagt atacactccg ctagcgctac gtgactggtt cagggctgcg ccccgaaacc
      421 cgctaaaacc actgccgcgc ctgcggcttg tccaacaccg tgccgaccgg gaaaagattt
      481 cccgtccgtc ccggcgttat caggaggccg gattggcaga caaacgcagc aaaatgctca
      541 ccatgtgggt gactgaggac gagcaccggc gtctgctgga gcgctgcgag ggtaagcaac
      601 tcgcggcctg gatgcggcag acgtgcctgg acgagaagcc cgcacgcgcc ggcaaacttc
      661 cgtcgatctc gccggcgctg cttcgtcagc ttgccggcat ggggaacaac cttaaccaga
      721 ttgcccgcca ggttaacgcc ggtggtggaa gcggacacga ccgcgtgcag attgtcgccg
      781 cgctgatggc catcgatgcc ggactcgagc ggttgcggca tgccgtactg gaaaagggtg
      841 ctgatgatga tcgttaagtt tcatcctcgg gggcgcggcg gcggcggcgg gccggtcgat
      901 tatctgctgg gtaaagatcg ccagcgcgac ggcgccagcg ttctgcaggg gaagccggat
      961 gaagtccggg agcttatcga cgcctcgccc tacgccaaaa agtacacttc cggcgttctg
     1021 tcttttgccg aacaggattt accgcccggc cagcgcgaaa agctgatggc gagtttcgag
     1081 cgggttctga tgcccggact cgataaagac cagtacagcg tgctgtgggt tgagcaccgg
     1141 gacaaggggc ggctggagct gaacttcctg atcccgaaca cggagcttct gaccggcaag
     1201 cggctacagc cgtattacga ccgcgccgac cgtccgcgca tcgatgcctg gcagaccata
     1261 gtgaacggca ggctggggct gcatgacccg aacgcgccgg agaaccggcg ggtgctggtc
     1321 tcgccttccg cgctgccgga agcgaagcag gaagccgccc aggcgattac gagcggcctg
     1381 cttgcccttg cctcatccgg ggagctgaaa acgcgtcagg acgtcactga ggcgctggaa
     1441 agcgcaggtt ttgaggtggt gcgcaccaca aaaagcagca tcagcattgc cgacccggac
     1501 ggggggcgaa acatccgact gaagggagcc atctatgaac agtcttttaa cgctggcgaa
     1561 ggacttagag cagaaatcga aagcgcagca gcagactacc ggcgagatgc tgaaagccgc
     1621 attcagcgag cacgagaagt ctgtcagagc ggaactgagc gaaagcgaga agagaatcag
     1681 cgccgccatc ctcgaccacg accggaagct gtcctcagcc atgagccagc gcacgaaagg
     1741 gatgctgcgc atggtcagcc agacgtggct gaccatcgtt ctggtctccg cgctgctgat
     1801 agcgtcgagc gcgggcattc tgtggtggca ggggcagcag atactcgaga actatacgac
     1861 catccgggag cagaagagca cgcaggccat gctgtcagag aggaacagcg gcgtacagct
     1921 ctcgacctgc ggcgagcaga gacgccgctg cgtgagggtg aacccggaag cgggacagtt
     1981 cggagaggac tcgagctgga tgatactggc ggggaaatag cacatgacgg agctggaaaa
     2041 acagttgctg agcgcattag agcagctaca gcaggactac tcgaaaaggc tggacgagtg
     2101 ggagaacgcc ttcgcggaat ggcggacgat gtctggtctt attcaacggg agaacgcggc
     2161 gctgaacgag cgcgtcacgg tcttgagcag gcaggtgcag agtttgagcg agcagctgcg
     2221 ccggttgtcg aaaggctgaa cgcgatagaa actcaccggc agcaggagcg ggcggtgcag
     2281 caccagaaag cgctggagct ggaacgatcg cagtggcagc atcatggtcc ttcgctatga
     2341 taagccgggt tctattaatt agttgttatg taaagatatt taaatttttc aacatgaggt
     2401 atttttatga atacatatat tttcctggga ggggctattg tggctgaagt cataggcacc
     2461 acctttatga aatattcaga aggatttaca cgcctgtggc cgtctgtagg aactgcaata
     2521 agttattgcg ctgcctttta tctgctttcc caaacattgg aaaatatacc taccggtatt
     2581 gcttacgcaa tttggtctgg tgcgggaatt gtactaataa gcctagctgg ttggttggtt
     2641 agcggtcaaa aacttgattg gcccgcaatt gcaggaatgt tccttatttg cgttggagtt
     2701 ttggttatta atattttttc aaaatcttct gcgcattaac tttttaccga agcatattgg
     2761 ccaaagcaaa aggatttcct tgagatcctt tctttctgcg cgtaatcttt ttccctgtaa
     2821 acaaaaaaac caccgctacc aacggtggtt cgtttgccgg aattcagagc taccaactct
     2881 ttgttccgat ggtaactggc tttcacggag cgcagatacc taaactgtcc tttcagtgta
     2941 gccgcactca ggctttcact tcaagaactc tgtaggcatt ctctacaatc tctgctccgt
     3001 gaacccagtt accaatggct accgccactg gcgatttgtc gtgtctttcc gggttggact
     3061 caagttgata gttaccggaa cgggcgtggt agtcggactg aacggggggt tcgtgcatac
     3121 agtccatcct ggagcgaact gcctacccgg aaccgagttt caggcgtgga atgagaaacc
     3181 gcggccataa cagcggaatg acaccggtaa accgaaaggc agg
//
