LOCUS       NZ_OV754004             3539 bp    DNA     circular CON 15-NOV-2023
DEFINITION  Klebsiella quasipneumoniae isolate BB1502 plasmid BB1502_6, complete
            sequence.
ACCESSION   NZ_OV754004
VERSION     NZ_OV754004.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA12561088
            Sequence Read Archive: ERR8135197, ERR8135746
            Assembly: GCF_928376045.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Delgado-Blas,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2022) UNIVERSIDAD COMPLUTENSE DE MADRID,
            Antimicrobial Resistance Unit (ARU), Av/ Puerta de Hierro, s/n,
            28040 (Madrid), Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/14/2023 14:56:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,742
            CDSs (total)                      :: 5,617
            Genes (coding)                    :: 5,353
            CDSs (with protein)               :: 5,353
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 264
            CDSs (without protein)            :: 264
            Pseudo Genes (ambiguous residues) :: 0 of 264
            Pseudo Genes (frameshifted)       :: 155 of 264
            Pseudo Genes (incomplete)         :: 114 of 264
            Pseudo Genes (internal stop)      :: 36 of 264
            Pseudo Genes (multiple problems)  :: 35 of 264
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OV754004.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="BB1502"
                     /db_xref="taxon:1463165"
                     /plasmid="BB1502_6"
     gene            complement(376..612)
                     /locus_tag="O1Y77_RS28615"
                     /old_locus_tag="VKR_05714"
     CDS             complement(376..612)
                     /locus_tag="O1Y77_RS28615"
                     /old_locus_tag="VKR_05714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            <1680..1835
                     /locus_tag="O1Y77_RS28620"
                     /pseudo=""
     CDS             <1680..1835
                     /locus_tag="O1Y77_RS28620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            1929..2573
                     /locus_tag="O1Y77_RS28625"
                     /old_locus_tag="VKR_05716"
     CDS             1929..2573
                     /locus_tag="O1Y77_RS28625"
                     /old_locus_tag="VKR_05716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QnrB family quinolone resistance pentapeptide
                     repeat protein"
                     /protein_id="WP_101989932.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEILHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="QnrB family quinolone resistance pentapeptide repeat
                     protein"
     gene            2827..3524
                     /locus_tag="O1Y77_RS28630"
     CDS             join(2827..3076,3076..3524)
                     /locus_tag="O1Y77_RS28630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558260.1"
                     /ribosomal_slippage=""
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1-like element IS1B family transposase"
                     /protein_id="WP_095033700.1"
                     /translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTY
                     TASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHFKKLRPQSVTSRIQPGSDVIV
                     CAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIW
                     MTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVI
                     GHYLNIKHYQ"
                     /name="IS1-like element IS1B family transposase"
     ARG             1930..2570
                     /name="qnrB"
                     /gene="qnrB"
                     /gene_name="QnrB family quinolone resistance pentapeptide
                     repeat protein"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="99.53"
                     /coverage="100.0"
     ARG             1894..2573
                     /name="QnrB5"
                     /gene="QnrB5"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="98.23"
                     /coverage="100.0"
     Typing          complement(778..951)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          930..1421
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 ggggttcctg tatctaattt tttgctggac attcataccc gcgatcatcg cgtttattga
       61 gtttattatt tatctatgcg attccgatga aaaattcgca cgaaaatatg gctaactcat
      121 agcaaaaaaa aagcccccta agggcttttt tttgtacctg acggtcagac cgattaaaca
      181 taacatccct tgcccgcacc cccgcaggcg ccctcagcgc aatcctgctg catcagggcc
      241 gtttccagca cctttcctca ccagtatccc ggaaaaacgc ccctgatgat ttctgcgcga
      301 ctgcatggct atgcacgcag gtgaatggca ggtgatttcg cagcgtcagc accactaaac
      361 cgccaaaagc caaaatcagc ggcgcggcgc gcgcggacgt gaccaggcaa aatcggactg
      421 ctgccgctca tcctcacgta atgcacgctg gcggtcggcg taacgctgca actcaatttg
      481 cgcacgcgct ctgttcagga cgatgtgccg gttaggctga tttagctttt tacctgacgc
      541 tctttcagct gcggcaacag catcatcaag aaattttttc tctgcaggcg tcaagtttgt
      601 cagtctggcc ataacgttct ccagtcagaa taaatcagca cagtctgcca gacacagtag
      661 aaacgatgaa gcgccagcga cggtgaaagg cagtcagaaa cggtgaacgg gagcggattt
      721 taatccggtg ccgtgaggcg ttggacaagc cgcaggcgcg tcattagctt ttagccggtt
      781 tcggggcgca gccctgaacc agtcacgtag cgctagcgga gtgtatactg gctgactatg
      841 ttggcacgga tgtggaaatc agtgaagtgc ttcatgtagc aggagaaaaa aggcggcacc
      901 agcgcgtcag caggatatgt agtacaggat atattccgct tcctcgctca ctgactcgct
      961 gcgctcggtc gttcggctgc ggcgagcggt gccggcttac aggcggggcg gaaatttcct
     1021 gggagatacc aggaaggagc ttaacaggga agagataagg ccgcggcgaa gccgtttttc
     1081 cataggctcc gcccccctga caaacatcat gaaatctgac gctcaaatca gtggtggcga
     1141 aacccgatgc ggcttaaaga taccaggcgt ttccccctgg tggctccctc gtgctccccc
     1201 gcattcctgc ctttcggttt accggtgtca ttccgctgtt atggccgcgt ttatctcatt
     1261 ccacgcctga cactcagttc cgcgaaggca gttcgctcct ggatggactg tatgcacgaa
     1321 ccccccgttc agtccgactg ctgcgcctta tccggtaact atcatcttga gtccaacccg
     1381 gaaagacacg acttatcgcc actggcagca gccactggta actgatttag aggagttagt
     1441 cttgaagtta tgcgcctgtt aaggctaaac tgaaagaaca gatttggtta ctgcgctcct
     1501 cgtaagccag ttaccacggt tcaaagagtt gctgctctga gaaccttcga aaaaccgcct
     1561 tgcagggcgg ttttttcgtt tacagagcaa gagattacga cgccacagaa aggatctcaa
     1621 gaagatcctt caccgtaatg gaaatctatc caatccgagc acataggata cacatcgtta
     1681 taacgctgga tctgcgtgaa ttccagcagc agcaagagaa agactttcta caaaccagct
     1741 tacagcaggc taaatttaac cagaaaaaag ccgctgaatt actgggtctg acttatcatc
     1801 agctacgtgc cttgctgaag aaacaccaga tctaatacgc atttgcaggt gtcatactgg
     1861 cgggtttgac gcataacgtc ataaggttta ccatggcgtc attactgtat aaaaacacag
     1921 gcatagatat gactctggca ttagttggcg aaaaaattga cagaaatcgc ttcaccggtg
     1981 agaaagttga aaatagtaca ttttttaact gcgatttttc aggtgccgac ctgagcggca
     2041 ctgaatttat cggctgccag ttctatgatc gcgaaagtca gaaagggtgc aattttagtc
     2101 gcgcaatgct gaaagatgcc attttcaaaa gctgtgattt atcaatggca gatttccgca
     2161 acgtcagtgc cttgggcatt gaaattctcc actgccgcgc acaaggcgca gatttccgcg
     2221 gtgcaagctt tatgaatatg atcaccacgc gcacctggtt ttgcagcgca tatatcacta
     2281 atactaatct aagctacgcc aatttttcga aagtcgtgtt ggaaaagtgt gagctgtggg
     2341 aaaaccgctg gatggggact caggtactgg gtgcgacgtt cagtggttca gatctctccg
     2401 gcggcgagtt ttcgactttc gactggcgag cagcaaactt cacacattgc gatctgacca
     2461 attcggagtt aggtgactta gatattcggg gtgttgattt acaaggcgtt aagttagaca
     2521 gctaccaggc atcgttgctc atggagcggc ttggcatcgc tgtgattggt tagttcagcg
     2581 tttacaccgg gagatgcgtt tgacgattta cttttaacca gtacgactcc tggcaagcat
     2641 tgtgaaacgt tttctccagt ggacgaatat cctgacctac cgcatcaacg acatgccatc
     2701 taatgctgca ttctggacag gaatttgatg aatatctaac caattcattt tcgcgagaac
     2761 aacgaataac cggtgatgct gccaacttac tgatttagtg tatgatggtg tttttgaggt
     2821 gctccagtgg cttctgtttc tatcagctgt ccctcctgtt cagctactga cggggtggtg
     2881 cgtaacggca aaagcaccgc cggacatcag cgctatctct gctctcactg ccgtaaaaca
     2941 tggcaactgc agttcactta caccgcttct caacccggta cgcaccagaa aatcattgat
     3001 atggccatga atggcgttgg atgccgggca accgcccgca ttatgggcgt tggcctcaac
     3061 acgattttcc gccatttaaa aaactcaggc cgcagtcggt aacctcgcgc atacagccgg
     3121 gcagtgacgt catcgtctgc gcggaaatgg acgaacagtg gggatacgtc ggggctaaat
     3181 cgcgccagcg ctggctgttt tacgcgtatg acaggctccg gaagacggtt gttgcgcacg
     3241 tattcggtga acgcactatg gcgacgctgg ggcgtcttat gagcctgctg tcaccctttg
     3301 acgtggtgat atggatgacg gatggctggc cgctgtatga atcccgcctg aagggaaagc
     3361 tgcacgtaat cagcaagcga tatacgcagc gaattgagcg gcataacctg aatctgaggc
     3421 agcacctggc acggctggga cggaagtcgc tgtcgttctc aaaatcggtg gagctgcatg
     3481 acaaagtcat cgggcattat ctgaacataa aacactatca ataagttgga gtcattacc
//
