LOCUS       NZ_OV754003             4494 bp    DNA     circular CON 15-NOV-2023
DEFINITION  Klebsiella quasipneumoniae isolate BB1502 plasmid BB1502_5, complete
            sequence.
ACCESSION   NZ_OV754003
VERSION     NZ_OV754003.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA12561088
            Sequence Read Archive: ERR8135197, ERR8135746
            Assembly: GCF_928376045.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Delgado-Blas,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2022) UNIVERSIDAD COMPLUTENSE DE MADRID,
            Antimicrobial Resistance Unit (ARU), Av/ Puerta de Hierro, s/n,
            28040 (Madrid), Spain
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/14/2023 14:56:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,742
            CDSs (total)                      :: 5,617
            Genes (coding)                    :: 5,353
            CDSs (with protein)               :: 5,353
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 264
            CDSs (without protein)            :: 264
            Pseudo Genes (ambiguous residues) :: 0 of 264
            Pseudo Genes (frameshifted)       :: 155 of 264
            Pseudo Genes (incomplete)         :: 114 of 264
            Pseudo Genes (internal stop)      :: 36 of 264
            Pseudo Genes (multiple problems)  :: 35 of 264
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OV754003.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /isolate="BB1502"
                     /db_xref="taxon:1463165"
                     /plasmid="BB1502_5"
     gene            complement(531..932)
                     /locus_tag="O1Y77_RS28575"
                     /old_locus_tag="VKR_05707"
     CDS             complement(531..932)
                     /locus_tag="O1Y77_RS28575"
                     /old_locus_tag="VKR_05707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(932..1123)
                     /locus_tag="O1Y77_RS28580"
                     /old_locus_tag="VKR_05708"
     CDS             complement(932..1123)
                     /locus_tag="O1Y77_RS28580"
                     /old_locus_tag="VKR_05708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_044525164.1"
                     /translation="MSKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1539..1652
                     /locus_tag="O1Y77_RS28585"
     CDS             1539..1652
                     /locus_tag="O1Y77_RS28585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072013440.1"
                     /translation="MHEPPVQSDCCALSGNYHLESNPVRHAKAPLAAATGN"
                     /name="replication initiation protein"
     gene            1919..2485
                     /locus_tag="O1Y77_RS28590"
                     /old_locus_tag="VKR_05710"
     CDS             1919..2485
                     /locus_tag="O1Y77_RS28590"
                     /old_locus_tag="VKR_05710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_064279389.1"
                     /translation="MNMKTLKDIIEKQKKEEEEQKFDPAEQIEEYISLVEKLYTITLES
                     IDELIKDGLIKQSRKKISINEESLGDYEIDSLILTINSSKIKFEPVGTMLIGSKGRVDV
                     TGPFGKEKFILIRKGVKSPSDLIKVRVNVVGAYKPEKDKTDEDVKKPSIDDWEWKTMPS
                     DSRWVKFDDVNSETITNIIMRMING"
                     /name="hypothetical protein"
     gene            2478..3029
                     /locus_tag="O1Y77_RS28595"
                     /old_locus_tag="VKR_05711"
     CDS             2478..3029
                     /locus_tag="O1Y77_RS28595"
                     /old_locus_tag="VKR_05711"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267668043.1"
                     /translation="MARIHAIKRSGLHIDIDYVVHKKIALDRAVILRYSTKNPDYHADF
                     VGLSEPEIEREKDLILKENDTTHCLLLLTAIEAIFRLDADQKYCNKKRDPLSRKIKEIY
                     DKTKGEKIKLDDDLINTRMNEDDARLKKDYNDLKTCFKFRHWLAHGRYWHPKRIKNFYF
                     DSILIVIDSILNSTKYNFEV"
                     /name="hypothetical protein"
     gene            complement(3119..3514)
                     /locus_tag="O1Y77_RS28600"
     CDS             complement(3119..3514)
                     /locus_tag="O1Y77_RS28600"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_126066683.1"
                     /translation="MNANEVKDILEHSNHDDWIVDDETGSFTYKNDLNLHIKRADYDNY
                     NSFSEPWAVSHPNPNACSVQYTVNYGSSFVDRKTLVSVDGHRATLPMPASANDLTVTSA
                     DVNFAKIVDTGERVDEYILRSGLKVQP"
                     /name="hypothetical protein"
     gene            3904..4146
                     /locus_tag="O1Y77_RS28605"
                     /old_locus_tag="VKR_05712"
     CDS             3904..4146
                     /locus_tag="O1Y77_RS28605"
                     /old_locus_tag="VKR_05712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017446859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_074196216.1"
                     /translation="MSKESELEFRTKELERQMKGVQRRIEVVNAKYDSQTKKQERRIRD
                     LEIKTAVQSGVTQREVANIYELSPGRVNQIIKKVG"
                     /name="hypothetical protein"
     gene            4327..4402
                     /locus_tag="O1Y77_RS28610"
                     /old_locus_tag="VKR_05713"
     tRNA            4327..4402
                     /locus_tag="O1Y77_RS28610"
                     /old_locus_tag="VKR_05713"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4360..4362,aa:Arg,seq:tct)
                     /name="tRNA-Arg"
     Typing          1245..1652
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.355"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cccatccgaa aacggtgaac ggggacgcaa tttattgcgt ggccgtgaag cgttgccggc
       61 gcagccggaa aaccggtttt cagcacgatc aggaatcggg ttcgtcgacg gccggcaatc
      121 acgttatggc aagtcgacgg acgactcacc acacgattca ccggcgattc gactcgtgac
      181 ttgactctag agtcgtcaag gtcaaaaaaa caccaaaatg acgattcgac tctagagtca
      241 agtcgtcata agttactgat agtcttatgt gagtcgtcga tgactctatg acgagtcgtc
      301 ggcaagtcgt acacgaatcg ccgacgactt ggattcacct tacagaaagt aatactgcgt
      361 aatttaataa cccacaacta actgatatta atgagttatc ttcaaaattt taattttgcg
      421 tggggtgtgg gtatttttag tggtgaggag cgttcagaga tctgacgatt tttgggaagg
      481 ttcaggaact ccccgggatg gccggagagg aaaactgaag catgacgggg tcaggatttt
      541 ttccagaatt tccaccatgg cgccggtgat tcagttaatt ttgcctggtg attttcaaga
      601 aggagcatgg cctgtttcag gctgtcaatg tgcgaatcct tggacaaaag taaggtgttc
      661 aggtgttcaa tctcctgttt cagatgacga atcacctgtt cactctggtc agcagaggct
      721 gtatcacgct gtccagagac ctgtccagaa tggtgttcac ccttcggttg ctcaaaggga
      781 ccaaagacac gtaaaagctc tgaagtatct accatttttg cattacgttc accgctacag
      841 gtggacaggt cacctgcttt aattaacctg tgcagtgttg ttctactctt acccgtcagt
      901 cgggcagcct cactaataga cactctggcc atcagttacc atcctgtaat gcatccagtc
      961 tcgaggacag tgtacggaaa agatgctccg catcatcgtg gagtttctca caaaggtcgg
     1021 cttcgacatc gagatcaagc tcgttaagtt tctccagcag gagcagagac tgattctgga
     1081 tgaatttagc catgttcagc gctgttttct gttgtttaga cataagaggc ctcagagcgt
     1141 cagtgctcag tgtaggtatg ttctcttttc cgcttcctcg ctcactcagt cgctacgctc
     1201 ctgccgttcg gctgcggcga gcggcaggag tatgcgtaca agagctcgag aaaaccgagc
     1261 ggtagcgtga cggggaaaag gaaatgccgc acggcggccg tttttccata ggctccgccc
     1321 ccctgacaag catcacagaa tttgacgctc aaatcagtgg tggcgaaacc cgacaggact
     1381 ataaagatac caggcgtttc cccctgatgg ctccctcgtg cgctctcctg ttcctgcctt
     1441 tcggtttacc agtgtcaatc cgctgttatg gccgcgttta tctcattcca cgcctgacac
     1501 tcagttccgg gtaggcagtt cgctccaagc tggactgtat gcacgaaccc cccgttcagt
     1561 ccgactgctg cgccttatcc ggtaactatc atcttgagtc caacccggta agacatgcaa
     1621 aagcgccact ggcagcagcc actggtaact gatttagagg agtttgtctt gaagttatgc
     1681 gccagttaag gctaaactga aagaacaagt tttggtgact gcgctcctcc aagccagtta
     1741 cctcggttca acgagcgcca actctatgaa ccttcgaaaa aaccgcccgc caaggcggtt
     1801 ttttcgtttc agaagcgaca atacctccga gcaagttaag cgtcaagaac aacacattgc
     1861 tcgacaccaa agcaaaggct agaatcgtaa aataattccg atctagaggt tacaaaaaat
     1921 gaacatgaaa acgctgaaag atataattga aaaacaaaaa aaagaagaag aagaacaaaa
     1981 attcgaccca gcggaacaaa tagaagaata cataagcctt gttgaaaaat tatatactat
     2041 tacattagaa tctattgacg aactaatcaa agatggattg ataaaacaat caagaaaaaa
     2101 aatatcaata aatgaagagt ctctaggtga ttatgaaatc gactctctaa tactcactat
     2161 aaactcaagt aaaataaaat ttgagccagt aggaaccatg ctaataggtt caaaaggaag
     2221 ggttgacgtc acagggccat ttggaaaaga aaaattcatt ctgatcagaa aaggagtcaa
     2281 aagccccagc gatttaataa aagtaagagt taacgtagtc ggggcatata aaccagaaaa
     2341 agataagacc gatgaagatg tgaaaaagcc gtcaattgat gattgggaat ggaaaacaat
     2401 gcctagcgat agtcgatggg ttaaatttga tgatgtgaat tccgagacca ttacgaatat
     2461 tattatgaga atgataaatg gctaggattc atgcaattaa aagatctggt ctacacatag
     2521 acattgacta tgtcgtacat aaaaagatag cactcgatcg tgctgtaatt ctgcggtatt
     2581 caacaaagaa cccagattac catgccgatt tcgtcggctt aagtgagccg gagattgaaa
     2641 gagaaaaaga cttaatacta aaagaaaatg acacaacaca ttgcctttta ttgttaacag
     2701 ctattgaagc aatatttcga ttagatgcag atcagaagta ctgcaataaa aaaagagacc
     2761 cattatcaag aaaaataaaa gagatatatg ataaaacaaa aggagaaaaa ataaaattag
     2821 atgatgattt aataaatacc agaatgaatg aagatgatgc tagattaaaa aaagactaca
     2881 acgatctaaa aacatgtttt aaattcaggc attggcttgc tcatggaaga tactggcatc
     2941 caaagagaat aaagaatttt tatttcgact ctatactaat agtgatagat tccattttaa
     3001 actcaaccaa atacaatttt gaagtttagg tcagtgacat taaaaaaagt caccataacg
     3061 tcccttaagc acagcacatt atgagccagc aattttagat tgctggctca catttaaatc
     3121 atggttgaac tttaagacca gagcggagaa tgtattcatc aacacgctcc ccagtatcta
     3181 caattttggc aaagttcacg tcagctgatg tcacggttaa atcatttgcg gatgcaggca
     3241 taggcaaggt tgcgcggtga ccatcgacag aaaccaaagt ctttctatca acaaatgatg
     3301 aaccatagtt tacggtgtac tgtactgaac aggcattcgg attcggatga ctaacagccc
     3361 agggttcact aaaggagttg tagttgtcat agtccgctct cttaatgtgc aaatttaagt
     3421 cgtttttata tgtaaacgac ccagtctcat catccacaat ccaatcatca tgattagaat
     3481 gttcaagaat gtcttttact tcattagcat tcatgcatac ccccatataa atcaatggtt
     3541 agaatgtaaa gatcgattga gttctacacc acactgctcc gaaaagttct ctatgtacaa
     3601 tcaaattttc cagtaaagaa tcaaataata aatactaaac atcgatttgt tttttcactt
     3661 aaaaatcata tacataaaat aggtgtgttt agccttttta atatcagaat taaaccaatc
     3721 gcaacttatt gtttttattg gaaaataaaa acaaagaaaa ataaggggaa acactgatta
     3781 tagaagttgc tgtgatcgta aaaaaaggct attgttgatt tgtcaaacat aggttaagac
     3841 cttccggcaa gaagaaacct tcgaatgaca cccaacaata accttactta gcgagtatat
     3901 catatgagta aagaatcaga actagagttc agaacaaaag aactcgaacg tcaaatgaaa
     3961 ggtgtccagc gacgtattga ggtggttaac gccaaatacg acagccaaac caagaagcaa
     4021 gaacgtcgca ttcgtgattt ggaaatcaaa acagcagtcc agtcaggcgt tacgcaacgt
     4081 gaggttgcaa acatttacga actgtcgccg ggtcgcgtta atcagatcat taaaaaagtc
     4141 ggctaatctc tagagaaaaa accgccaaaa ggcggttttt tctcgcaata caaactgacg
     4201 tgctttttac cataaggtct cattacatac cctgttctga tgcgaccggt aaacacataa
     4261 aaaacttcac aaaaagcatg cagtgatgtt aaatcaaaga cggtcccgac tttgttgggt
     4321 ccagatgggg atatagcttc aacggtagag cagcggactt ctaatctgat ggttgtgggt
     4381 tcaaatccca ttgtctccac caaaagcctc cccccctaaa aggggggagg caactattct
     4441 ggccacagca tttaccataa cgtcgcatta cgcgcaccgc taaaacggcc tcag
//
